Results 1 - 20 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11117 | 3' | -60.3 | NC_002794.1 | + | 41246 | 0.66 | 0.781686 |
Target: 5'- cGCGGCCGCCgacGCCgGC-GGcCCgUCGuCg -3' miRNA: 3'- -CGCCGGUGG---UGGaCGaCCaGG-AGCuG- -5' |
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11117 | 3' | -60.3 | NC_002794.1 | + | 56909 | 0.66 | 0.790472 |
Target: 5'- cGUGGCCACgggCGCCggGCUGccggCCUCGcACc -3' miRNA: 3'- -CGCCGGUG---GUGGa-CGACca--GGAGC-UG- -5' |
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11117 | 3' | -60.3 | NC_002794.1 | + | 81187 | 0.66 | 0.790472 |
Target: 5'- aGCGGCUgucucuuguacgGCCGCCUGCUcccGcUCUUCGuCg -3' miRNA: 3'- -CGCCGG------------UGGUGGACGA---CcAGGAGCuG- -5' |
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11117 | 3' | -60.3 | NC_002794.1 | + | 49392 | 0.66 | 0.790472 |
Target: 5'- -aGGCCGCCGCCgucgGCcacGGcggCCgCGGCg -3' miRNA: 3'- cgCCGGUGGUGGa---CGa--CCa--GGaGCUG- -5' |
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11117 | 3' | -60.3 | NC_002794.1 | + | 11861 | 0.66 | 0.781686 |
Target: 5'- cCGGCgACgACCgcccgccccGCgacgGGUCCUCGAg -3' miRNA: 3'- cGCCGgUGgUGGa--------CGa---CCAGGAGCUg -5' |
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11117 | 3' | -60.3 | NC_002794.1 | + | 68685 | 0.66 | 0.785215 |
Target: 5'- cGUGGCCGCCccACCccagucuccgcgagcUGCUcgccccaccccgGGUCUUCGAa -3' miRNA: 3'- -CGCCGGUGG--UGG---------------ACGA------------CCAGGAGCUg -5' |
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11117 | 3' | -60.3 | NC_002794.1 | + | 156418 | 0.66 | 0.785215 |
Target: 5'- cGCGGCCACgGCCgGCgGGUgagagaccggucgcgCCgaaGGCg -3' miRNA: 3'- -CGCCGGUGgUGGaCGaCCA---------------GGag-CUG- -5' |
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11117 | 3' | -60.3 | NC_002794.1 | + | 181408 | 0.66 | 0.781686 |
Target: 5'- cCGGCCGCCGCCaccGCcauGUCCgcgaagccgUCGGCg -3' miRNA: 3'- cGCCGGUGGUGGa--CGac-CAGG---------AGCUG- -5' |
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11117 | 3' | -60.3 | NC_002794.1 | + | 180029 | 0.66 | 0.781686 |
Target: 5'- cGCGGCCGuCCgACCcGCaucacGUCCUCGuCa -3' miRNA: 3'- -CGCCGGU-GG-UGGaCGac---CAGGAGCuG- -5' |
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11117 | 3' | -60.3 | NC_002794.1 | + | 127602 | 0.66 | 0.790472 |
Target: 5'- cGCGGCCGCUgagcggcgcggACCgGaCUcGUCgUCGACg -3' miRNA: 3'- -CGCCGGUGG-----------UGGaC-GAcCAGgAGCUG- -5' |
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11117 | 3' | -60.3 | NC_002794.1 | + | 107821 | 0.66 | 0.790472 |
Target: 5'- cGCGGUCACCAagaCguuuCUGGUCUUCuuGGCc -3' miRNA: 3'- -CGCCGGUGGUg--Gac--GACCAGGAG--CUG- -5' |
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11117 | 3' | -60.3 | NC_002794.1 | + | 102094 | 0.66 | 0.790472 |
Target: 5'- aCGaGCCGCCGCCcacggUGCgGGUCaucuacggCGACa -3' miRNA: 3'- cGC-CGGUGGUGG-----ACGaCCAGga------GCUG- -5' |
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11117 | 3' | -60.3 | NC_002794.1 | + | 8855 | 0.66 | 0.807644 |
Target: 5'- gGCGGCgACCcCCUGCgaguUCCUC-ACg -3' miRNA: 3'- -CGCCGgUGGuGGACGacc-AGGAGcUG- -5' |
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11117 | 3' | -60.3 | NC_002794.1 | + | 74124 | 0.66 | 0.807644 |
Target: 5'- aGCaGGCCGCCGCC-GCc-GUCUcccuggUCGACa -3' miRNA: 3'- -CG-CCGGUGGUGGaCGacCAGG------AGCUG- -5' |
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11117 | 3' | -60.3 | NC_002794.1 | + | 26107 | 0.66 | 0.799127 |
Target: 5'- cCGGCgAUCGCCg--UGGgccugCCUCGACg -3' miRNA: 3'- cGCCGgUGGUGGacgACCa----GGAGCUG- -5' |
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11117 | 3' | -60.3 | NC_002794.1 | + | 103943 | 0.66 | 0.799127 |
Target: 5'- cGUGGCCGCCGCC-GCUcgccagccgccGGcgCUUCaGACu -3' miRNA: 3'- -CGCCGGUGGUGGaCGA-----------CCa-GGAG-CUG- -5' |
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11117 | 3' | -60.3 | NC_002794.1 | + | 119546 | 0.66 | 0.806799 |
Target: 5'- cGCGGCCgucgccgGCCACgUGUcccGGagcgCCUUGACu -3' miRNA: 3'- -CGCCGG-------UGGUGgACGa--CCa---GGAGCUG- -5' |
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11117 | 3' | -60.3 | NC_002794.1 | + | 33705 | 0.66 | 0.799127 |
Target: 5'- gGCGGgCGa-GCC-GCUGGUCUaCGACg -3' miRNA: 3'- -CGCCgGUggUGGaCGACCAGGaGCUG- -5' |
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11117 | 3' | -60.3 | NC_002794.1 | + | 33417 | 0.66 | 0.799127 |
Target: 5'- cUGGCgCACgACCcucggGCUGGUCC-CGGu -3' miRNA: 3'- cGCCG-GUGgUGGa----CGACCAGGaGCUg -5' |
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11117 | 3' | -60.3 | NC_002794.1 | + | 17918 | 0.66 | 0.799127 |
Target: 5'- gGCaGCuCACCACCgGCcGGcUCCcCGACc -3' miRNA: 3'- -CGcCG-GUGGUGGaCGaCC-AGGaGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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