miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11117 3' -60.3 NC_002794.1 + 151590 0.76 0.247382
Target:  5'- cGCGcGCCGCCGCCgcggGCccgcGGuUCCUCGGCu -3'
miRNA:   3'- -CGC-CGGUGGUGGa---CGa---CC-AGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 194017 0.76 0.277242
Target:  5'- cGCGGCCGCCGCC-GCcGGcgCCUCGcCc -3'
miRNA:   3'- -CGCCGGUGGUGGaCGaCCa-GGAGCuG- -5'
11117 3' -60.3 NC_002794.1 + 61970 0.75 0.289968
Target:  5'- aGCGGCCGCCugCUGCaGGUCaagCuGCa -3'
miRNA:   3'- -CGCCGGUGGugGACGaCCAGga-GcUG- -5'
11117 3' -60.3 NC_002794.1 + 114751 0.75 0.309909
Target:  5'- gGC-GCCGcCCGCCgGCgccGGUCCUCGGCg -3'
miRNA:   3'- -CGcCGGU-GGUGGaCGa--CCAGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 111631 0.75 0.316784
Target:  5'- cGCGGCCGCCGCCgGUcGGgcgCCgCGGCc -3'
miRNA:   3'- -CGCCGGUGGUGGaCGaCCa--GGaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 152586 0.74 0.352871
Target:  5'- gGCGGCCGCCAcgucCCUGCggcgcgGGcCCaagCGGCg -3'
miRNA:   3'- -CGCCGGUGGU----GGACGa-----CCaGGa--GCUG- -5'
11117 3' -60.3 NC_002794.1 + 147012 0.73 0.382977
Target:  5'- gGCGGCgGCCGCCggcGCUcGGUCUaaggacgaagccgUCGGCg -3'
miRNA:   3'- -CGCCGgUGGUGGa--CGA-CCAGG-------------AGCUG- -5'
11117 3' -60.3 NC_002794.1 + 34280 0.73 0.383771
Target:  5'- gGCGGCCAgCGCCaGCgaccgGGagcucuacgacUCCUCGACc -3'
miRNA:   3'- -CGCCGGUgGUGGaCGa----CC-----------AGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 79551 0.72 0.416414
Target:  5'- cUGGCCcCCACCUccccgucCUGGuUCCUCGGCg -3'
miRNA:   3'- cGCCGGuGGUGGAc------GACC-AGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 16306 0.72 0.429938
Target:  5'- gGCGGCCGCgGCCgGCUGGaUCCcccugccccuggcCGGCa -3'
miRNA:   3'- -CGCCGGUGgUGGaCGACC-AGGa------------GCUG- -5'
11117 3' -60.3 NC_002794.1 + 128547 0.72 0.441981
Target:  5'- -gGGUgCGCCGuCCUGCUGGUCaucgcgCUCGGCg -3'
miRNA:   3'- cgCCG-GUGGU-GGACGACCAG------GAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 121251 0.72 0.441981
Target:  5'- cGCcGCCGCCGCC-GC-GG-CCUCGGCa -3'
miRNA:   3'- -CGcCGGUGGUGGaCGaCCaGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 90763 0.72 0.450699
Target:  5'- cGUGGCCAUCGCgccgCUGCUGGUggaCCU-GACg -3'
miRNA:   3'- -CGCCGGUGGUG----GACGACCA---GGAgCUG- -5'
11117 3' -60.3 NC_002794.1 + 117369 0.72 0.450699
Target:  5'- aGCGGCgGgCCGCCUGCacGGUCg-CGGCg -3'
miRNA:   3'- -CGCCGgU-GGUGGACGa-CCAGgaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 123383 0.71 0.468414
Target:  5'- aGCGGUCugCAcacCCUGCUGcUCCgcgUCGGCg -3'
miRNA:   3'- -CGCCGGugGU---GGACGACcAGG---AGCUG- -5'
11117 3' -60.3 NC_002794.1 + 38541 0.71 0.471999
Target:  5'- cGCcGCCGCCGCCUccccgccagaagcccGCcGGcgCCUCGACg -3'
miRNA:   3'- -CGcCGGUGGUGGA---------------CGaCCa-GGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 143162 0.71 0.477403
Target:  5'- cGCGGUgaagCGCCagaGCUUGCggcGGUUCUCGACg -3'
miRNA:   3'- -CGCCG----GUGG---UGGACGa--CCAGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 182780 0.71 0.477403
Target:  5'- cCGGuCCACCACCUGCcagcgcacGGUCgCggUCGACa -3'
miRNA:   3'- cGCC-GGUGGUGGACGa-------CCAG-G--AGCUG- -5'
11117 3' -60.3 NC_002794.1 + 68431 0.71 0.486478
Target:  5'- gGUGGcCCACCACC-GCUGGUuCCgccUGGCc -3'
miRNA:   3'- -CGCC-GGUGGUGGaCGACCA-GGa--GCUG- -5'
11117 3' -60.3 NC_002794.1 + 80431 0.71 0.495633
Target:  5'- cGgGGCCGCCGCCgGCggccgccGGcCCgUCGGCg -3'
miRNA:   3'- -CgCCGGUGGUGGaCGa------CCaGG-AGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.