miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11117 3' -60.3 NC_002794.1 + 151739 0.71 0.504866
Target:  5'- uCGGCCGCCggucGCCUcgcgcGCUcGUCCUCGAg -3'
miRNA:   3'- cGCCGGUGG----UGGA-----CGAcCAGGAGCUg -5'
11117 3' -60.3 NC_002794.1 + 126412 0.71 0.513238
Target:  5'- gGCGGUCGCgAUcuggCUGCUGGUcgaggugugggcgCCUCGGCc -3'
miRNA:   3'- -CGCCGGUGgUG----GACGACCA-------------GGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 71749 0.71 0.514172
Target:  5'- -aGGCCGCCGCCgGCUcuuccgaccGGUCCgcgccgucgcgCGGCg -3'
miRNA:   3'- cgCCGGUGGUGGaCGA---------CCAGGa----------GCUG- -5'
11117 3' -60.3 NC_002794.1 + 32246 0.7 0.523547
Target:  5'- -aGGuCCugCAgCUGCUGG-CgCUCGACg -3'
miRNA:   3'- cgCC-GGugGUgGACGACCaG-GAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 59263 0.7 0.532987
Target:  5'- gGCGaGCaCGCgCGCCUGCUGGagaUCCgcucgccgcUCGACg -3'
miRNA:   3'- -CGC-CG-GUG-GUGGACGACC---AGG---------AGCUG- -5'
11117 3' -60.3 NC_002794.1 + 100143 0.7 0.552043
Target:  5'- cGCGGCCguucGCCgACCUGUaccUGGUggCCUgCGGCa -3'
miRNA:   3'- -CGCCGG----UGG-UGGACG---ACCA--GGA-GCUG- -5'
11117 3' -60.3 NC_002794.1 + 192154 0.7 0.561649
Target:  5'- cGCGGUCGCggcggaGCCUGCgguaGGUCCggCGAa -3'
miRNA:   3'- -CGCCGGUGg-----UGGACGa---CCAGGa-GCUg -5'
11117 3' -60.3 NC_002794.1 + 107386 0.7 0.561649
Target:  5'- cGCGGCCGUCggGCUggcGCUGaUCCUCGGCg -3'
miRNA:   3'- -CGCCGGUGG--UGGa--CGACcAGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 68827 0.69 0.58099
Target:  5'- aCGGCgaCGCCGCCggcGCUcgcGGUCCcCGACg -3'
miRNA:   3'- cGCCG--GUGGUGGa--CGA---CCAGGaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 123280 0.69 0.58099
Target:  5'- cGCGGUCgucgcgggagACCugCUGCUGGaggagaUCUUCGAg -3'
miRNA:   3'- -CGCCGG----------UGGugGACGACC------AGGAGCUg -5'
11117 3' -60.3 NC_002794.1 + 17651 0.69 0.581961
Target:  5'- cGCGGCCGCCGCCaccgccgccaccgccGCcGGcCC-CGGCg -3'
miRNA:   3'- -CGCCGGUGGUGGa--------------CGaCCaGGaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 107479 0.69 0.590713
Target:  5'- aCGGCCACCaucACCUGgaGGUgUugUUGACg -3'
miRNA:   3'- cGCCGGUGG---UGGACgaCCAgG--AGCUG- -5'
11117 3' -60.3 NC_002794.1 + 187393 0.69 0.610237
Target:  5'- cGUGGCacagauacaGCC-CCUGCaGGUUCUCGAg -3'
miRNA:   3'- -CGCCGg--------UGGuGGACGaCCAGGAGCUg -5'
11117 3' -60.3 NC_002794.1 + 133740 0.69 0.610237
Target:  5'- uGCuGCCGuucggUCGCCUGCagGGUCC-CGACu -3'
miRNA:   3'- -CGcCGGU-----GGUGGACGa-CCAGGaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 102632 0.69 0.610237
Target:  5'- gGCGGUCAuCCGCCgGCUGGcggcgCgCUCGGa -3'
miRNA:   3'- -CGCCGGU-GGUGGaCGACCa----G-GAGCUg -5'
11117 3' -60.3 NC_002794.1 + 58391 0.69 0.620025
Target:  5'- cGCGGgCGCCAgCUGCUGGagcacgCCaaggugCGGCc -3'
miRNA:   3'- -CGCCgGUGGUgGACGACCa-----GGa-----GCUG- -5'
11117 3' -60.3 NC_002794.1 + 123582 0.69 0.620025
Target:  5'- aCGGCCGCCGCCcgUGCaGcGUCC-CGGa -3'
miRNA:   3'- cGCCGGUGGUGG--ACGaC-CAGGaGCUg -5'
11117 3' -60.3 NC_002794.1 + 190128 0.69 0.626882
Target:  5'- aGCGGuCCGCgCGCCgauaccacgcguacUGCUGGcggcggcucUCCUCGAa -3'
miRNA:   3'- -CGCC-GGUG-GUGG--------------ACGACC---------AGGAGCUg -5'
11117 3' -60.3 NC_002794.1 + 140303 0.69 0.629822
Target:  5'- uCGGCCAagGCCUGCcGGcggcuggagaagUCCUUGGCg -3'
miRNA:   3'- cGCCGGUggUGGACGaCC------------AGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 100326 0.68 0.639619
Target:  5'- cGCGGCCGgCGCacgGCcGGcUCUCGACc -3'
miRNA:   3'- -CGCCGGUgGUGga-CGaCCaGGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.