miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11117 3' -60.3 NC_002794.1 + 41246 0.66 0.781686
Target:  5'- cGCGGCCGCCgacGCCgGC-GGcCCgUCGuCg -3'
miRNA:   3'- -CGCCGGUGG---UGGaCGaCCaGG-AGCuG- -5'
11117 3' -60.3 NC_002794.1 + 180029 0.66 0.781686
Target:  5'- cGCGGCCGuCCgACCcGCaucacGUCCUCGuCa -3'
miRNA:   3'- -CGCCGGU-GG-UGGaCGac---CAGGAGCuG- -5'
11117 3' -60.3 NC_002794.1 + 181408 0.66 0.781686
Target:  5'- cCGGCCGCCGCCaccGCcauGUCCgcgaagccgUCGGCg -3'
miRNA:   3'- cGCCGGUGGUGGa--CGac-CAGG---------AGCUG- -5'
11117 3' -60.3 NC_002794.1 + 11861 0.66 0.781686
Target:  5'- cCGGCgACgACCgcccgccccGCgacgGGUCCUCGAg -3'
miRNA:   3'- cGCCGgUGgUGGa--------CGa---CCAGGAGCUg -5'
11117 3' -60.3 NC_002794.1 + 35455 0.66 0.7808
Target:  5'- uGCGGCUgaucGCCAgCUGCcucuaccUGuUCUUCGACg -3'
miRNA:   3'- -CGCCGG----UGGUgGACG-------ACcAGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 186068 0.66 0.779913
Target:  5'- cGUGGCCACCGCCgccgccgccuucGCcGGgcgCUUCGuCg -3'
miRNA:   3'- -CGCCGGUGGUGGa-----------CGaCCa--GGAGCuG- -5'
11117 3' -60.3 NC_002794.1 + 1494 0.66 0.772776
Target:  5'- gGCGGCgACCgGCCUuauacgggguccGgaGGcguguUCCUCGACa -3'
miRNA:   3'- -CGCCGgUGG-UGGA------------CgaCC-----AGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 16497 0.66 0.763752
Target:  5'- cGCcGCCACCGCCgccGCc-GUCCcCGGCg -3'
miRNA:   3'- -CGcCGGUGGUGGa--CGacCAGGaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 39529 0.66 0.763752
Target:  5'- uCGGCUACCACCuggggcUGCUGuGcggCCUCuGCg -3'
miRNA:   3'- cGCCGGUGGUGG------ACGAC-Ca--GGAGcUG- -5'
11117 3' -60.3 NC_002794.1 + 150213 0.66 0.763752
Target:  5'- aGCGGCUGCUGCCgaGCUGcGUgCgaCGGCa -3'
miRNA:   3'- -CGCCGGUGGUGGa-CGAC-CAgGa-GCUG- -5'
11117 3' -60.3 NC_002794.1 + 65122 0.66 0.763752
Target:  5'- -aGGUCGCgCGCCUGUccgaGcUCCUCGGCg -3'
miRNA:   3'- cgCCGGUG-GUGGACGa---CcAGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 146359 0.66 0.763752
Target:  5'- gGCGGCCGCCcggguaGCCguccGCUcGUCCa-GACa -3'
miRNA:   3'- -CGCCGGUGG------UGGa---CGAcCAGGagCUG- -5'
11117 3' -60.3 NC_002794.1 + 118680 0.66 0.763752
Target:  5'- cGCGGCCGCCGCCggcgGCaGcGcCCagGAg -3'
miRNA:   3'- -CGCCGGUGGUGGa---CGaC-CaGGagCUg -5'
11117 3' -60.3 NC_002794.1 + 121381 0.66 0.760112
Target:  5'- cCGGCCGCCGCCgggaccgcggccgGCgccgGGaCCgCGACc -3'
miRNA:   3'- cGCCGGUGGUGGa------------CGa---CCaGGaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 24010 0.66 0.754621
Target:  5'- -gGGCCGCCgucACC-GC-GGcgCCUCGGCg -3'
miRNA:   3'- cgCCGGUGG---UGGaCGaCCa-GGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 101989 0.66 0.754621
Target:  5'- uCGGCCGCgACaUGCUcucgcGGaCCUCGGCc -3'
miRNA:   3'- cGCCGGUGgUGgACGA-----CCaGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 57661 0.66 0.753702
Target:  5'- -aGGCCGCCuucacgcACCUGCccaUGGacauccugcaCCUCGGCg -3'
miRNA:   3'- cgCCGGUGG-------UGGACG---ACCa---------GGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 37775 0.66 0.753702
Target:  5'- aGCGGCCGucgucguCgGCC-GCaGGcgCCUCGACg -3'
miRNA:   3'- -CGCCGGU-------GgUGGaCGaCCa-GGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 130276 0.67 0.74539
Target:  5'- aGCGGUUgaGCCGCCgcucGCUcccgGGUCCggaaCGGCg -3'
miRNA:   3'- -CGCCGG--UGGUGGa---CGA----CCAGGa---GCUG- -5'
11117 3' -60.3 NC_002794.1 + 96859 0.67 0.74539
Target:  5'- -aGGCCACCGUC-GU--GUCCUCGACg -3'
miRNA:   3'- cgCCGGUGGUGGaCGacCAGGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.