miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11117 3' -60.3 NC_002794.1 + 141651 0.67 0.736069
Target:  5'- cGUGGCCGCgGCCgccgGCgGGUCgagCGAa -3'
miRNA:   3'- -CGCCGGUGgUGGa---CGaCCAGga-GCUg -5'
11117 3' -60.3 NC_002794.1 + 143559 0.67 0.736069
Target:  5'- aCGGUgGCCcaGCCgUGCgcgccGUCCUCGGCg -3'
miRNA:   3'- cGCCGgUGG--UGG-ACGac---CAGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 137594 0.67 0.736069
Target:  5'- uGCGgggaGCCGCCGCCgGC-GGUCg-CGGCg -3'
miRNA:   3'- -CGC----CGGUGGUGGaCGaCCAGgaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 93831 0.67 0.736069
Target:  5'- gGCGGCCAUCGCCgagaucaUGGacggCCgCGGCg -3'
miRNA:   3'- -CGCCGGUGGUGGacg----ACCa---GGaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 104400 0.67 0.726665
Target:  5'- gGUGGUCGuCCGCCgcgGCcucGG-CCUCGGCc -3'
miRNA:   3'- -CGCCGGU-GGUGGa--CGa--CCaGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 82049 0.67 0.726665
Target:  5'- gGCGGCgGCgGCg-GCgucGUCCUCGGCc -3'
miRNA:   3'- -CGCCGgUGgUGgaCGac-CAGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 17418 0.67 0.723829
Target:  5'- cGCGGCCaucgcggucuccgcGCCGCCgGCgcucgGGcCCgCGACc -3'
miRNA:   3'- -CGCCGG--------------UGGUGGaCGa----CCaGGaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 20360 0.67 0.717186
Target:  5'- uCGaGCUggACCACCUGCgccGGaUCgUCGACg -3'
miRNA:   3'- cGC-CGG--UGGUGGACGa--CC-AGgAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 18799 0.67 0.717186
Target:  5'- aCGGCC-CCGCCgGCcaacgGGUcggcgaCCUCGGCc -3'
miRNA:   3'- cGCCGGuGGUGGaCGa----CCA------GGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 60667 0.67 0.717186
Target:  5'- cGCGcGCCGCCGCC-GCc--UCCgUCGACg -3'
miRNA:   3'- -CGC-CGGUGGUGGaCGaccAGG-AGCUG- -5'
11117 3' -60.3 NC_002794.1 + 105429 0.67 0.717186
Target:  5'- gGUGGCCGCCGCC-GCg---CCggCGGCg -3'
miRNA:   3'- -CGCCGGUGGUGGaCGaccaGGa-GCUG- -5'
11117 3' -60.3 NC_002794.1 + 79027 0.67 0.717186
Target:  5'- uCGGCCGCCuuCUGCcGG-CC-CGGCc -3'
miRNA:   3'- cGCCGGUGGugGACGaCCaGGaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 131037 0.67 0.717186
Target:  5'- cGCGGCCggcuGCCGCCgaUGUUcGUCgaCGACg -3'
miRNA:   3'- -CGCCGG----UGGUGG--ACGAcCAGgaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 119772 0.67 0.717186
Target:  5'- cGCGGCCgGCCuCCaggcgGCUccGGUCCgcCGACu -3'
miRNA:   3'- -CGCCGG-UGGuGGa----CGA--CCAGGa-GCUG- -5'
11117 3' -60.3 NC_002794.1 + 112827 0.67 0.717186
Target:  5'- uCGGCCGCCGaguaCgGCUGcUCgUCGGCg -3'
miRNA:   3'- cGCCGGUGGUg---GaCGACcAGgAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 64213 0.67 0.707641
Target:  5'- aGCGGgcccaucgaaCugCACCUGCgccgCCUCGACa -3'
miRNA:   3'- -CGCCg---------GugGUGGACGaccaGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 144942 0.67 0.707641
Target:  5'- gGUGGUgcuggACCACCUGUgucUCCUCGGCg -3'
miRNA:   3'- -CGCCGg----UGGUGGACGaccAGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 85990 0.67 0.698999
Target:  5'- cGCGGCC-CCGCCgacgguuccgaacccGCUGGcgCCgaccgugCGGCg -3'
miRNA:   3'- -CGCCGGuGGUGGa--------------CGACCa-GGa------GCUG- -5'
11117 3' -60.3 NC_002794.1 + 19972 0.67 0.698036
Target:  5'- uGCGGCCGCC-CUucggGCUGuccGUCCUggUGGCg -3'
miRNA:   3'- -CGCCGGUGGuGGa---CGAC---CAGGA--GCUG- -5'
11117 3' -60.3 NC_002794.1 + 14014 0.67 0.698036
Target:  5'- aCGGUCGgCAagUGCUGGUCCUacUGGCu -3'
miRNA:   3'- cGCCGGUgGUggACGACCAGGA--GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.