miRNA display CGI


Results 1 - 20 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11117 3' -60.3 NC_002794.1 + 1494 0.66 0.772776
Target:  5'- gGCGGCgACCgGCCUuauacgggguccGgaGGcguguUCCUCGACa -3'
miRNA:   3'- -CGCCGgUGG-UGGA------------CgaCC-----AGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 8855 0.66 0.807644
Target:  5'- gGCGGCgACCcCCUGCgaguUCCUC-ACg -3'
miRNA:   3'- -CGCCGgUGGuGGACGacc-AGGAGcUG- -5'
11117 3' -60.3 NC_002794.1 + 11075 0.68 0.639619
Target:  5'- uUGGUaCGCCGCCUGCcucGUCgUCGGCg -3'
miRNA:   3'- cGCCG-GUGGUGGACGac-CAGgAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 11861 0.66 0.781686
Target:  5'- cCGGCgACgACCgcccgccccGCgacgGGUCCUCGAg -3'
miRNA:   3'- cGCCGgUGgUGGa--------CGa---CCAGGAGCUg -5'
11117 3' -60.3 NC_002794.1 + 14014 0.67 0.698036
Target:  5'- aCGGUCGgCAagUGCUGGUCCUacUGGCu -3'
miRNA:   3'- cGCCGGUgGUggACGACCAGGA--GCUG- -5'
11117 3' -60.3 NC_002794.1 + 16306 0.72 0.429938
Target:  5'- gGCGGCCGCgGCCgGCUGGaUCCcccugccccuggcCGGCa -3'
miRNA:   3'- -CGCCGGUGgUGGaCGACC-AGGa------------GCUG- -5'
11117 3' -60.3 NC_002794.1 + 16497 0.66 0.763752
Target:  5'- cGCcGCCACCGCCgccGCc-GUCCcCGGCg -3'
miRNA:   3'- -CGcCGGUGGUGGa--CGacCAGGaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 17418 0.67 0.723829
Target:  5'- cGCGGCCaucgcggucuccgcGCCGCCgGCgcucgGGcCCgCGACc -3'
miRNA:   3'- -CGCCGG--------------UGGUGGaCGa----CCaGGaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 17651 0.69 0.581961
Target:  5'- cGCGGCCGCCGCCaccgccgccaccgccGCcGGcCC-CGGCg -3'
miRNA:   3'- -CGCCGGUGGUGGa--------------CGaCCaGGaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 17918 0.66 0.799127
Target:  5'- gGCaGCuCACCACCgGCcGGcUCCcCGACc -3'
miRNA:   3'- -CGcCG-GUGGUGGaCGaCC-AGGaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 18799 0.67 0.717186
Target:  5'- aCGGCC-CCGCCgGCcaacgGGUcggcgaCCUCGGCc -3'
miRNA:   3'- cGCCGGuGGUGGaCGa----CCA------GGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 19972 0.67 0.698036
Target:  5'- uGCGGCCGCC-CUucggGCUGuccGUCCUggUGGCg -3'
miRNA:   3'- -CGCCGGUGGuGGa---CGAC---CAGGA--GCUG- -5'
11117 3' -60.3 NC_002794.1 + 20360 0.67 0.717186
Target:  5'- uCGaGCUggACCACCUGCgccGGaUCgUCGACg -3'
miRNA:   3'- cGC-CGG--UGGUGGACGa--CC-AGgAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 22921 0.68 0.659191
Target:  5'- cGCGGCCGCCaaACCggcacccaucgGCUGG-CCgacgggcCGGCg -3'
miRNA:   3'- -CGCCGGUGG--UGGa----------CGACCaGGa------GCUG- -5'
11117 3' -60.3 NC_002794.1 + 24010 0.66 0.754621
Target:  5'- -gGGCCGCCgucACC-GC-GGcgCCUCGGCg -3'
miRNA:   3'- cgCCGGUGG---UGGaCGaCCa-GGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 26107 0.66 0.799127
Target:  5'- cCGGCgAUCGCCg--UGGgccugCCUCGACg -3'
miRNA:   3'- cGCCGgUGGUGGacgACCa----GGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 32246 0.7 0.523547
Target:  5'- -aGGuCCugCAgCUGCUGG-CgCUCGACg -3'
miRNA:   3'- cgCC-GGugGUgGACGACCaG-GAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 33417 0.66 0.799127
Target:  5'- cUGGCgCACgACCcucggGCUGGUCC-CGGu -3'
miRNA:   3'- cGCCG-GUGgUGGa----CGACCAGGaGCUg -5'
11117 3' -60.3 NC_002794.1 + 33533 0.66 0.781686
Target:  5'- cCGGCCugGCCACCcaGCUGGUgcgccagaaCCUgcUGACg -3'
miRNA:   3'- cGCCGG--UGGUGGa-CGACCA---------GGA--GCUG- -5'
11117 3' -60.3 NC_002794.1 + 33705 0.66 0.799127
Target:  5'- gGCGGgCGa-GCC-GCUGGUCUaCGACg -3'
miRNA:   3'- -CGCCgGUggUGGaCGACCAGGaGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.