miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11117 3' -60.3 NC_002794.1 + 34280 0.73 0.383771
Target:  5'- gGCGGCCAgCGCCaGCgaccgGGagcucuacgacUCCUCGACc -3'
miRNA:   3'- -CGCCGGUgGUGGaCGa----CC-----------AGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 35455 0.66 0.7808
Target:  5'- uGCGGCUgaucGCCAgCUGCcucuaccUGuUCUUCGACg -3'
miRNA:   3'- -CGCCGG----UGGUgGACG-------ACcAGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 37775 0.66 0.753702
Target:  5'- aGCGGCCGucgucguCgGCC-GCaGGcgCCUCGACg -3'
miRNA:   3'- -CGCCGGU-------GgUGGaCGaCCa-GGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 37937 0.68 0.649412
Target:  5'- cGCGGCCGCCcguGCCUcgGCgacUCgCUCGGCg -3'
miRNA:   3'- -CGCCGGUGG---UGGA--CGaccAG-GAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 38541 0.71 0.471999
Target:  5'- cGCcGCCGCCGCCUccccgccagaagcccGCcGGcgCCUCGACg -3'
miRNA:   3'- -CGcCGGUGGUGGA---------------CGaCCa-GGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 39529 0.66 0.763752
Target:  5'- uCGGCUACCACCuggggcUGCUGuGcggCCUCuGCg -3'
miRNA:   3'- cGCCGGUGGUGG------ACGAC-Ca--GGAGcUG- -5'
11117 3' -60.3 NC_002794.1 + 41246 0.66 0.781686
Target:  5'- cGCGGCCGCCgacGCCgGC-GGcCCgUCGuCg -3'
miRNA:   3'- -CGCCGGUGG---UGGaCGaCCaGG-AGCuG- -5'
11117 3' -60.3 NC_002794.1 + 49392 0.66 0.790472
Target:  5'- -aGGCCGCCGCCgucgGCcacGGcggCCgCGGCg -3'
miRNA:   3'- cgCCGGUGGUGGa---CGa--CCa--GGaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 50738 0.68 0.688382
Target:  5'- gGCGGCCGCCucgACUcGCUcGUCCgccccgggCGGCg -3'
miRNA:   3'- -CGCCGGUGG---UGGaCGAcCAGGa-------GCUG- -5'
11117 3' -60.3 NC_002794.1 + 52934 0.68 0.678684
Target:  5'- uCGGCCGgCAcgcgagcaagcCCaGCaGGUCCUCGGCc -3'
miRNA:   3'- cGCCGGUgGU-----------GGaCGaCCAGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 56909 0.66 0.790472
Target:  5'- cGUGGCCACgggCGCCggGCUGccggCCUCGcACc -3'
miRNA:   3'- -CGCCGGUG---GUGGa-CGACca--GGAGC-UG- -5'
11117 3' -60.3 NC_002794.1 + 57661 0.66 0.753702
Target:  5'- -aGGCCGCCuucacgcACCUGCccaUGGacauccugcaCCUCGGCg -3'
miRNA:   3'- cgCCGGUGG-------UGGACG---ACCa---------GGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 58391 0.69 0.620025
Target:  5'- cGCGGgCGCCAgCUGCUGGagcacgCCaaggugCGGCc -3'
miRNA:   3'- -CGCCgGUGGUgGACGACCa-----GGa-----GCUG- -5'
11117 3' -60.3 NC_002794.1 + 59263 0.7 0.532987
Target:  5'- gGCGaGCaCGCgCGCCUGCUGGagaUCCgcucgccgcUCGACg -3'
miRNA:   3'- -CGC-CG-GUG-GUGGACGACC---AGG---------AGCUG- -5'
11117 3' -60.3 NC_002794.1 + 59732 0.68 0.667001
Target:  5'- -aGGCCgACCGCCUGCUcuacagcaccaaGUCCUCcACg -3'
miRNA:   3'- cgCCGG-UGGUGGACGAc-----------CAGGAGcUG- -5'
11117 3' -60.3 NC_002794.1 + 60667 0.67 0.717186
Target:  5'- cGCGcGCCGCCGCC-GCc--UCCgUCGACg -3'
miRNA:   3'- -CGC-CGGUGGUGGaCGaccAGG-AGCUG- -5'
11117 3' -60.3 NC_002794.1 + 61970 0.75 0.289968
Target:  5'- aGCGGCCGCCugCUGCaGGUCaagCuGCa -3'
miRNA:   3'- -CGCCGGUGGugGACGaCCAGga-GcUG- -5'
11117 3' -60.3 NC_002794.1 + 63481 0.68 0.688382
Target:  5'- gGCGGCCGCCgucgacgacGCCgcgGCgucgucGUCCgCGACg -3'
miRNA:   3'- -CGCCGGUGG---------UGGa--CGac----CAGGaGCUG- -5'
11117 3' -60.3 NC_002794.1 + 64213 0.67 0.707641
Target:  5'- aGCGGgcccaucgaaCugCACCUGCgccgCCUCGACa -3'
miRNA:   3'- -CGCCg---------GugGUGGACGaccaGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 65122 0.66 0.763752
Target:  5'- -aGGUCGCgCGCCUGUccgaGcUCCUCGGCg -3'
miRNA:   3'- cgCCGGUG-GUGGACGa---CcAGGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.