miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11117 3' -60.3 NC_002794.1 + 194017 0.76 0.277242
Target:  5'- cGCGGCCGCCGCC-GCcGGcgCCUCGcCc -3'
miRNA:   3'- -CGCCGGUGGUGGaCGaCCa-GGAGCuG- -5'
11117 3' -60.3 NC_002794.1 + 193931 0.68 0.688382
Target:  5'- uCGGCCACCGCCgGCUccGGcCC-CGcCg -3'
miRNA:   3'- cGCCGGUGGUGGaCGA--CCaGGaGCuG- -5'
11117 3' -60.3 NC_002794.1 + 192323 0.68 0.687414
Target:  5'- cGCcGCCGCCGCC-GCUuccuccucuucgcGGaCCUCGGCc -3'
miRNA:   3'- -CGcCGGUGGUGGaCGA-------------CCaGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 192154 0.7 0.561649
Target:  5'- cGCGGUCGCggcggaGCCUGCgguaGGUCCggCGAa -3'
miRNA:   3'- -CGCCGGUGg-----UGGACGa---CCAGGa-GCUg -5'
11117 3' -60.3 NC_002794.1 + 190128 0.69 0.626882
Target:  5'- aGCGGuCCGCgCGCCgauaccacgcguacUGCUGGcggcggcucUCCUCGAa -3'
miRNA:   3'- -CGCC-GGUG-GUGG--------------ACGACC---------AGGAGCUg -5'
11117 3' -60.3 NC_002794.1 + 188412 0.68 0.639619
Target:  5'- -gGGaCCGCCGCCgcaacugccGCaGGUCCUCGuCg -3'
miRNA:   3'- cgCC-GGUGGUGGa--------CGaCCAGGAGCuG- -5'
11117 3' -60.3 NC_002794.1 + 187393 0.69 0.610237
Target:  5'- cGUGGCacagauacaGCC-CCUGCaGGUUCUCGAg -3'
miRNA:   3'- -CGCCGg--------UGGuGGACGaCCAGGAGCUg -5'
11117 3' -60.3 NC_002794.1 + 186068 0.66 0.779913
Target:  5'- cGUGGCCACCGCCgccgccgccuucGCcGGgcgCUUCGuCg -3'
miRNA:   3'- -CGCCGGUGGUGGa-----------CGaCCa--GGAGCuG- -5'
11117 3' -60.3 NC_002794.1 + 182780 0.71 0.477403
Target:  5'- cCGGuCCACCACCUGCcagcgcacGGUCgCggUCGACa -3'
miRNA:   3'- cGCC-GGUGGUGGACGa-------CCAG-G--AGCUG- -5'
11117 3' -60.3 NC_002794.1 + 181408 0.66 0.781686
Target:  5'- cCGGCCGCCGCCaccGCcauGUCCgcgaagccgUCGGCg -3'
miRNA:   3'- cGCCGGUGGUGGa--CGac-CAGG---------AGCUG- -5'
11117 3' -60.3 NC_002794.1 + 180029 0.66 0.781686
Target:  5'- cGCGGCCGuCCgACCcGCaucacGUCCUCGuCa -3'
miRNA:   3'- -CGCCGGU-GG-UGGaCGac---CAGGAGCuG- -5'
11117 3' -60.3 NC_002794.1 + 178195 0.68 0.659191
Target:  5'- uGCGGCCGgCugaCUGCccucGGUagCCUCGGCg -3'
miRNA:   3'- -CGCCGGUgGug-GACGa---CCA--GGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 156418 0.66 0.785215
Target:  5'- cGCGGCCACgGCCgGCgGGUgagagaccggucgcgCCgaaGGCg -3'
miRNA:   3'- -CGCCGGUGgUGGaCGaCCA---------------GGag-CUG- -5'
11117 3' -60.3 NC_002794.1 + 152586 0.74 0.352871
Target:  5'- gGCGGCCGCCAcgucCCUGCggcgcgGGcCCaagCGGCg -3'
miRNA:   3'- -CGCCGGUGGU----GGACGa-----CCaGGa--GCUG- -5'
11117 3' -60.3 NC_002794.1 + 151739 0.71 0.504866
Target:  5'- uCGGCCGCCggucGCCUcgcgcGCUcGUCCUCGAg -3'
miRNA:   3'- cGCCGGUGG----UGGA-----CGAcCAGGAGCUg -5'
11117 3' -60.3 NC_002794.1 + 151590 0.76 0.247382
Target:  5'- cGCGcGCCGCCGCCgcggGCccgcGGuUCCUCGGCu -3'
miRNA:   3'- -CGC-CGGUGGUGGa---CGa---CC-AGGAGCUG- -5'
11117 3' -60.3 NC_002794.1 + 150213 0.66 0.763752
Target:  5'- aGCGGCUGCUGCCgaGCUGcGUgCgaCGGCa -3'
miRNA:   3'- -CGCCGGUGGUGGa-CGAC-CAgGa-GCUG- -5'
11117 3' -60.3 NC_002794.1 + 149987 0.68 0.668952
Target:  5'- gGCGGCCGCUAUCUGCcGcGcUgCUaCGACg -3'
miRNA:   3'- -CGCCGGUGGUGGACGaC-C-AgGA-GCUG- -5'
11117 3' -60.3 NC_002794.1 + 147012 0.73 0.382977
Target:  5'- gGCGGCgGCCGCCggcGCUcGGUCUaaggacgaagccgUCGGCg -3'
miRNA:   3'- -CGCCGgUGGUGGa--CGA-CCAGG-------------AGCUG- -5'
11117 3' -60.3 NC_002794.1 + 146359 0.66 0.763752
Target:  5'- gGCGGCCGCCcggguaGCCguccGCUcGUCCa-GACa -3'
miRNA:   3'- -CGCCGGUGG------UGGa---CGAcCAGGagCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.