miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11117 5' -58.3 NC_002794.1 + 55283 0.66 0.867423
Target:  5'- cGGUGGcggcgacgaGGGCGGCggcGGCGucgCGGCgGg -3'
miRNA:   3'- uCCAUC---------UCCGUCGa--CCGCua-GUCGgC- -5'
11117 5' -58.3 NC_002794.1 + 90326 0.66 0.867423
Target:  5'- --cUGGccGCAGCUGGUGGccgUCGGCCu -3'
miRNA:   3'- uccAUCucCGUCGACCGCU---AGUCGGc -5'
11117 5' -58.3 NC_002794.1 + 94204 0.66 0.860032
Target:  5'- cGGUugcgcuugugacGGuGGCGGCgacgGGCGggCgGGCCGg -3'
miRNA:   3'- uCCA------------UCuCCGUCGa---CCGCuaG-UCGGC- -5'
11117 5' -58.3 NC_002794.1 + 82042 0.66 0.860032
Target:  5'- -cGUGGGcGGCGGCggcGGCGGcgucguccUCGGCCu -3'
miRNA:   3'- ucCAUCU-CCGUCGa--CCGCU--------AGUCGGc -5'
11117 5' -58.3 NC_002794.1 + 109148 0.66 0.852444
Target:  5'- gAGGgGGAGGCGGgggagaUGGCGAcgagCGGCgGu -3'
miRNA:   3'- -UCCaUCUCCGUCg-----ACCGCUa---GUCGgC- -5'
11117 5' -58.3 NC_002794.1 + 115041 0.66 0.852444
Target:  5'- cAGGUGcgaccGGGCGGCgGGCGG-CAGCg- -3'
miRNA:   3'- -UCCAUc----UCCGUCGaCCGCUaGUCGgc -5'
11117 5' -58.3 NC_002794.1 + 48432 0.66 0.852444
Target:  5'- aGGGcGGAGGUGGC-GGCGGccaucgggacaCAGCCGc -3'
miRNA:   3'- -UCCaUCUCCGUCGaCCGCUa----------GUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 94463 0.66 0.852444
Target:  5'- cGGUGGcgacggcaacGGCGGC-GGCGGacgCGGCCGc -3'
miRNA:   3'- uCCAUCu---------CCGUCGaCCGCUa--GUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 115917 0.66 0.852444
Target:  5'- gGGGUGGAcuuGGC-GC-GGCGGcgGGCCGg -3'
miRNA:   3'- -UCCAUCU---CCGuCGaCCGCUagUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 120990 0.66 0.852444
Target:  5'- cGuGUAGcGGCGGCgGGCcauggccgagGGUCGGCCu -3'
miRNA:   3'- uC-CAUCuCCGUCGaCCG----------CUAGUCGGc -5'
11117 5' -58.3 NC_002794.1 + 116071 0.66 0.844664
Target:  5'- gGGGUcgcGGAGcGCucGGCgcGGCGGUCGucGCCGg -3'
miRNA:   3'- -UCCA---UCUC-CG--UCGa-CCGCUAGU--CGGC- -5'
11117 5' -58.3 NC_002794.1 + 38155 0.66 0.844664
Target:  5'- gAGGUAGgcgagcAGGCGGCUG-CGcUCGGCg- -3'
miRNA:   3'- -UCCAUC------UCCGUCGACcGCuAGUCGgc -5'
11117 5' -58.3 NC_002794.1 + 70197 0.66 0.842294
Target:  5'- uGGUGGAGcggagaucCAGCUcgcccggacggucgGGCGggCGGCCGg -3'
miRNA:   3'- uCCAUCUCc-------GUCGA--------------CCGCuaGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 37751 0.66 0.8367
Target:  5'- cGGcGGcgcGGCGGCgccGGCGGgagCGGCCGu -3'
miRNA:   3'- uCCaUCu--CCGUCGa--CCGCUa--GUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 103448 0.67 0.820245
Target:  5'- uGGaAGAGcuGCGGCUGGUuGAUggaCAGCCGc -3'
miRNA:   3'- uCCaUCUC--CGUCGACCG-CUA---GUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 158747 0.67 0.820245
Target:  5'- cGGGUAGuGuGCGcGCacgUGGUGAUCGGuuGa -3'
miRNA:   3'- -UCCAUCuC-CGU-CG---ACCGCUAGUCggC- -5'
11117 5' -58.3 NC_002794.1 + 142400 0.67 0.820245
Target:  5'- cGGUGcAGGCGGCgucGGCGG-C-GCCGg -3'
miRNA:   3'- uCCAUcUCCGUCGa--CCGCUaGuCGGC- -5'
11117 5' -58.3 NC_002794.1 + 37511 0.67 0.815178
Target:  5'- cGuGUGGucGCgcagcaccacgucccGGCUGGCGAaCAGCCGc -3'
miRNA:   3'- uC-CAUCucCG---------------UCGACCGCUaGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 37886 0.67 0.811768
Target:  5'- cGGcGGGGGCGGUggcGGCGG-CAGCgGc -3'
miRNA:   3'- uCCaUCUCCGUCGa--CCGCUaGUCGgC- -5'
11117 5' -58.3 NC_002794.1 + 101643 0.67 0.811768
Target:  5'- gAGcGUGGgcGGGCgGGC-GGCGGUUAGCCc -3'
miRNA:   3'- -UC-CAUC--UCCG-UCGaCCGCUAGUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.