Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11117 | 5' | -58.3 | NC_002794.1 | + | 137940 | 0.67 | 0.803135 |
Target: 5'- gAGcUGGAGGCAGC-GGCGGaugcguUC-GCCGa -3' miRNA: 3'- -UCcAUCUCCGUCGaCCGCU------AGuCGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 47322 | 0.67 | 0.803135 |
Target: 5'- aGGGUGGGGuGCccGGCUcccgcGGCGG-CGGCCu -3' miRNA: 3'- -UCCAUCUC-CG--UCGA-----CCGCUaGUCGGc -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 142400 | 0.67 | 0.820245 |
Target: 5'- cGGUGcAGGCGGCgucGGCGG-C-GCCGg -3' miRNA: 3'- uCCAUcUCCGUCGa--CCGCUaGuCGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 158747 | 0.67 | 0.820245 |
Target: 5'- cGGGUAGuGuGCGcGCacgUGGUGAUCGGuuGa -3' miRNA: 3'- -UCCAUCuC-CGU-CG---ACCGCUAGUCggC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 103448 | 0.67 | 0.820245 |
Target: 5'- uGGaAGAGcuGCGGCUGGUuGAUggaCAGCCGc -3' miRNA: 3'- uCCaUCUC--CGUCGACCG-CUA---GUCGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 37511 | 0.67 | 0.815178 |
Target: 5'- cGuGUGGucGCgcagcaccacgucccGGCUGGCGAaCAGCCGc -3' miRNA: 3'- uC-CAUCucCG---------------UCGACCGCUaGUCGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 37886 | 0.67 | 0.811768 |
Target: 5'- cGGcGGGGGCGGUggcGGCGG-CAGCgGc -3' miRNA: 3'- uCCaUCUCCGUCGa--CCGCUaGUCGgC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 101643 | 0.67 | 0.811768 |
Target: 5'- gAGcGUGGgcGGGCgGGC-GGCGGUUAGCCc -3' miRNA: 3'- -UC-CAUC--UCCG-UCGaCCGCUAGUCGGc -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 32850 | 0.68 | 0.719769 |
Target: 5'- cGGUAGcGGCAGCggccgagccGGCGggCGGCgGc -3' miRNA: 3'- uCCAUCuCCGUCGa--------CCGCuaGUCGgC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 21910 | 0.68 | 0.739019 |
Target: 5'- cGGUGGuGGCGGCggagacgacGGCGG-CGGCgCGg -3' miRNA: 3'- uCCAUCuCCGUCGa--------CCGCUaGUCG-GC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 132117 | 0.68 | 0.739019 |
Target: 5'- gGGGUGGAcGGuCGGCUGGCaGGUacucGCUGg -3' miRNA: 3'- -UCCAUCU-CC-GUCGACCG-CUAgu--CGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 14029 | 0.68 | 0.739019 |
Target: 5'- uGGUccuacuGGCuGCUGGCGAUCcuuacGCCGa -3' miRNA: 3'- uCCAucu---CCGuCGACCGCUAGu----CGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 107880 | 0.68 | 0.719769 |
Target: 5'- ---cGGAGGCGGCgcGGCGGgugCGGCUGc -3' miRNA: 3'- uccaUCUCCGUCGa-CCGCUa--GUCGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 142343 | 0.68 | 0.767204 |
Target: 5'- cGGcGGAGGCGGCggaggcGGCGGaggCGGCgGa -3' miRNA: 3'- uCCaUCUCCGUCGa-----CCGCUa--GUCGgC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 95754 | 0.68 | 0.748515 |
Target: 5'- uGGUAcucgcGGGGCGGCggccGCGAcggCGGCCGg -3' miRNA: 3'- uCCAU-----CUCCGUCGac--CGCUa--GUCGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 153131 | 0.68 | 0.767204 |
Target: 5'- cGGUGGcGGCAGCgGGUccgGAaCGGCCu -3' miRNA: 3'- uCCAUCuCCGUCGaCCG---CUaGUCGGc -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 95848 | 0.69 | 0.690376 |
Target: 5'- cGGccggGGAGGCGGCgGGCG---GGCCGu -3' miRNA: 3'- uCCa---UCUCCGUCGaCCGCuagUCGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 99337 | 0.69 | 0.710032 |
Target: 5'- uGGcAGAuGCuGCUGGCGAUCcGUCGg -3' miRNA: 3'- uCCaUCUcCGuCGACCGCUAGuCGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 146872 | 0.69 | 0.690376 |
Target: 5'- cGGGUGGGGG--GC--GCGGUCGGCCGa -3' miRNA: 3'- -UCCAUCUCCguCGacCGCUAGUCGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 129067 | 0.69 | 0.690376 |
Target: 5'- cGGUGuGucGCGGCUGGCGG-CGGaCCGu -3' miRNA: 3'- uCCAU-CucCGUCGACCGCUaGUC-GGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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