miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11117 5' -58.3 NC_002794.1 + 48215 0.79 0.209691
Target:  5'- gAGGUAGAGGCAGagcaGGCGGccgccaucguUCGGCCGc -3'
miRNA:   3'- -UCCAUCUCCGUCga--CCGCU----------AGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 115177 0.74 0.421405
Target:  5'- uGGUAGAcGGCccgguGCcGGCGGUCgAGCCGg -3'
miRNA:   3'- uCCAUCU-CCGu----CGaCCGCUAG-UCGGC- -5'
11117 5' -58.3 NC_002794.1 + 91867 0.72 0.512423
Target:  5'- aGGGUcccGGGGGUGGC-GGCGG-CGGCCGc -3'
miRNA:   3'- -UCCA---UCUCCGUCGaCCGCUaGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 182299 0.72 0.531628
Target:  5'- cGGGUGGAcgggcagacgGGCGGacgGGCGGUCGGgCGg -3'
miRNA:   3'- -UCCAUCU----------CCGUCga-CCGCUAGUCgGC- -5'
11117 5' -58.3 NC_002794.1 + 183593 0.72 0.541328
Target:  5'- cGGUGGGGGCGGaggggGGCcgcGcgCGGCCGg -3'
miRNA:   3'- uCCAUCUCCGUCga---CCG---CuaGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 110483 0.71 0.580656
Target:  5'- gGGGUagAGAGGCGGUggcGGCGccuggagaaaGUCGGUCGa -3'
miRNA:   3'- -UCCA--UCUCCGUCGa--CCGC----------UAGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 189303 0.71 0.580656
Target:  5'- gAGGUGGucgugcaguucGGGCAGCUGGuCGGggggCAGCa- -3'
miRNA:   3'- -UCCAUC-----------UCCGUCGACC-GCUa---GUCGgc -5'
11117 5' -58.3 NC_002794.1 + 117076 0.71 0.580656
Target:  5'- cGGGUAcGGcGGCAGC-GGCGuguccacuUCGGCCGa -3'
miRNA:   3'- -UCCAU-CU-CCGUCGaCCGCu-------AGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 58744 0.7 0.640568
Target:  5'- cGGGcucaacGGGCAGCUGGCGGaggAGCCGc -3'
miRNA:   3'- -UCCauc---UCCGUCGACCGCUag-UCGGC- -5'
11117 5' -58.3 NC_002794.1 + 140008 0.7 0.650574
Target:  5'- cGGGUGGAGGCcGCggaGGCcg-CGGCCc -3'
miRNA:   3'- -UCCAUCUCCGuCGa--CCGcuaGUCGGc -5'
11117 5' -58.3 NC_002794.1 + 142309 0.69 0.660565
Target:  5'- cAGGUggcGGAGGCGGC-GGCGcaggCGGCgGa -3'
miRNA:   3'- -UCCA---UCUCCGUCGaCCGCua--GUCGgC- -5'
11117 5' -58.3 NC_002794.1 + 44238 0.69 0.670535
Target:  5'- cGGUGccGGGCGGCUcggugccgGGCGGcUCGGCCGc -3'
miRNA:   3'- uCCAUc-UCCGUCGA--------CCGCU-AGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 190973 0.69 0.670535
Target:  5'- cGGGgcagcagAGcAGGCAGCgcGGCGAcggcgucgcgaUCGGCCGu -3'
miRNA:   3'- -UCCa------UC-UCCGUCGa-CCGCU-----------AGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 68480 0.69 0.67153
Target:  5'- uGGGgcacGGAGGCGGCcgagccggccgugcgGGUGAUCuGCCa -3'
miRNA:   3'- -UCCa---UCUCCGUCGa--------------CCGCUAGuCGGc -5'
11117 5' -58.3 NC_002794.1 + 125730 0.69 0.678489
Target:  5'- cGGGaGGAGGCGGa-GGCGGgccgcgggacggCGGCCGg -3'
miRNA:   3'- -UCCaUCUCCGUCgaCCGCUa-----------GUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 191880 0.69 0.680474
Target:  5'- cGGaGGGGGCGGCggaGGCGGgaUCGGCa- -3'
miRNA:   3'- uCCaUCUCCGUCGa--CCGCU--AGUCGgc -5'
11117 5' -58.3 NC_002794.1 + 55360 0.69 0.680474
Target:  5'- cGGccGAGGCGGCcgaGGCGGccgaggCGGCCGa -3'
miRNA:   3'- uCCauCUCCGUCGa--CCGCUa-----GUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 87222 0.69 0.688399
Target:  5'- cGGGUGGGGGUgcaGGCcgGGCGGgugggggugcaGGCCGg -3'
miRNA:   3'- -UCCAUCUCCG---UCGa-CCGCUag---------UCGGC- -5'
11117 5' -58.3 NC_002794.1 + 87096 0.69 0.688399
Target:  5'- cGGGUGGGGGUgcaGGCcgGGCGGgugggggugcaGGCCGg -3'
miRNA:   3'- -UCCAUCUCCG---UCGa-CCGCUag---------UCGGC- -5'
11117 5' -58.3 NC_002794.1 + 87138 0.69 0.688399
Target:  5'- cGGGUGGGGGUgcaGGCcgGGCGGgugggggugcaGGCCGg -3'
miRNA:   3'- -UCCAUCUCCG---UCGa-CCGCUag---------UCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.