miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11117 5' -58.3 NC_002794.1 + 159895 0.67 0.803135
Target:  5'- gAGGgcGGGGUAGCgaagGGUaGGUgGGUCGg -3'
miRNA:   3'- -UCCauCUCCGUCGa---CCG-CUAgUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 55213 0.67 0.803135
Target:  5'- cGGcGGAGGCc---GGCGGUCgAGCCGa -3'
miRNA:   3'- uCCaUCUCCGucgaCCGCUAG-UCGGC- -5'
11117 5' -58.3 NC_002794.1 + 137940 0.67 0.803135
Target:  5'- gAGcUGGAGGCAGC-GGCGGaugcguUC-GCCGa -3'
miRNA:   3'- -UCcAUCUCCGUCGaCCGCU------AGuCGGC- -5'
11117 5' -58.3 NC_002794.1 + 47322 0.67 0.803135
Target:  5'- aGGGUGGGGuGCccGGCUcccgcGGCGG-CGGCCu -3'
miRNA:   3'- -UCCAUCUC-CG--UCGA-----CCGCUaGUCGGc -5'
11117 5' -58.3 NC_002794.1 + 94056 0.67 0.794354
Target:  5'- cGGUgcGGGGGCGGCggggGGCGAg-GGCa- -3'
miRNA:   3'- uCCA--UCUCCGUCGa---CCGCUagUCGgc -5'
11117 5' -58.3 NC_002794.1 + 118375 0.67 0.794354
Target:  5'- cGGUAGAGauacuGCcGCUcGGCGGcgcUCAGCCc -3'
miRNA:   3'- uCCAUCUC-----CGuCGA-CCGCU---AGUCGGc -5'
11117 5' -58.3 NC_002794.1 + 143370 0.67 0.785434
Target:  5'- aGGGUgAGGGGCAGauaGGagagGGUCAGCUGc -3'
miRNA:   3'- -UCCA-UCUCCGUCga-CCg---CUAGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 96913 0.67 0.776381
Target:  5'- gAGGUggcGGAGGC-GCcGGCGA-CAGCaCGc -3'
miRNA:   3'- -UCCA---UCUCCGuCGaCCGCUaGUCG-GC- -5'
11117 5' -58.3 NC_002794.1 + 142343 0.68 0.767204
Target:  5'- cGGcGGAGGCGGCggaggcGGCGGaggCGGCgGa -3'
miRNA:   3'- uCCaUCUCCGUCGa-----CCGCUa--GUCGgC- -5'
11117 5' -58.3 NC_002794.1 + 153131 0.68 0.767204
Target:  5'- cGGUGGcGGCAGCgGGUccgGAaCGGCCu -3'
miRNA:   3'- uCCAUCuCCGUCGaCCG---CUaGUCGGc -5'
11117 5' -58.3 NC_002794.1 + 95754 0.68 0.748515
Target:  5'- uGGUAcucgcGGGGCGGCggccGCGAcggCGGCCGg -3'
miRNA:   3'- uCCAU-----CUCCGUCGac--CGCUa--GUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 14029 0.68 0.739019
Target:  5'- uGGUccuacuGGCuGCUGGCGAUCcuuacGCCGa -3'
miRNA:   3'- uCCAucu---CCGuCGACCGCUAGu----CGGC- -5'
11117 5' -58.3 NC_002794.1 + 132117 0.68 0.739019
Target:  5'- gGGGUGGAcGGuCGGCUGGCaGGUacucGCUGg -3'
miRNA:   3'- -UCCAUCU-CC-GUCGACCG-CUAgu--CGGC- -5'
11117 5' -58.3 NC_002794.1 + 21910 0.68 0.739019
Target:  5'- cGGUGGuGGCGGCggagacgacGGCGG-CGGCgCGg -3'
miRNA:   3'- uCCAUCuCCGUCGa--------CCGCUaGUCG-GC- -5'
11117 5' -58.3 NC_002794.1 + 32850 0.68 0.719769
Target:  5'- cGGUAGcGGCAGCggccgagccGGCGggCGGCgGc -3'
miRNA:   3'- uCCAUCuCCGUCGa--------CCGCuaGUCGgC- -5'
11117 5' -58.3 NC_002794.1 + 107880 0.68 0.719769
Target:  5'- ---cGGAGGCGGCgcGGCGGgugCGGCUGc -3'
miRNA:   3'- uccaUCUCCGUCGa-CCGCUa--GUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 179692 0.69 0.710032
Target:  5'- cGGUGGcGGCGGCgacggUGGCGAc--GCCGg -3'
miRNA:   3'- uCCAUCuCCGUCG-----ACCGCUaguCGGC- -5'
11117 5' -58.3 NC_002794.1 + 99337 0.69 0.710032
Target:  5'- uGGcAGAuGCuGCUGGCGAUCcGUCGg -3'
miRNA:   3'- uCCaUCUcCGuCGACCGCUAGuCGGC- -5'
11117 5' -58.3 NC_002794.1 + 146872 0.69 0.690376
Target:  5'- cGGGUGGGGG--GC--GCGGUCGGCCGa -3'
miRNA:   3'- -UCCAUCUCCguCGacCGCUAGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 129067 0.69 0.690376
Target:  5'- cGGUGuGucGCGGCUGGCGG-CGGaCCGu -3'
miRNA:   3'- uCCAU-CucCGUCGACCGCUaGUC-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.