miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11117 5' -58.3 NC_002794.1 + 14029 0.68 0.739019
Target:  5'- uGGUccuacuGGCuGCUGGCGAUCcuuacGCCGa -3'
miRNA:   3'- uCCAucu---CCGuCGACCGCUAGu----CGGC- -5'
11117 5' -58.3 NC_002794.1 + 21910 0.68 0.739019
Target:  5'- cGGUGGuGGCGGCggagacgacGGCGG-CGGCgCGg -3'
miRNA:   3'- uCCAUCuCCGUCGa--------CCGCUaGUCG-GC- -5'
11117 5' -58.3 NC_002794.1 + 32850 0.68 0.719769
Target:  5'- cGGUAGcGGCAGCggccgagccGGCGggCGGCgGc -3'
miRNA:   3'- uCCAUCuCCGUCGa--------CCGCuaGUCGgC- -5'
11117 5' -58.3 NC_002794.1 + 37511 0.67 0.815178
Target:  5'- cGuGUGGucGCgcagcaccacgucccGGCUGGCGAaCAGCCGc -3'
miRNA:   3'- uC-CAUCucCG---------------UCGACCGCUaGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 37751 0.66 0.8367
Target:  5'- cGGcGGcgcGGCGGCgccGGCGGgagCGGCCGu -3'
miRNA:   3'- uCCaUCu--CCGUCGa--CCGCUa--GUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 37886 0.67 0.811768
Target:  5'- cGGcGGGGGCGGUggcGGCGG-CAGCgGc -3'
miRNA:   3'- uCCaUCUCCGUCGa--CCGCUaGUCGgC- -5'
11117 5' -58.3 NC_002794.1 + 38155 0.66 0.844664
Target:  5'- gAGGUAGgcgagcAGGCGGCUG-CGcUCGGCg- -3'
miRNA:   3'- -UCCAUC------UCCGUCGACcGCuAGUCGgc -5'
11117 5' -58.3 NC_002794.1 + 44238 0.69 0.670535
Target:  5'- cGGUGccGGGCGGCUcggugccgGGCGGcUCGGCCGc -3'
miRNA:   3'- uCCAUc-UCCGUCGA--------CCGCU-AGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 47322 0.67 0.803135
Target:  5'- aGGGUGGGGuGCccGGCUcccgcGGCGG-CGGCCu -3'
miRNA:   3'- -UCCAUCUC-CG--UCGA-----CCGCUaGUCGGc -5'
11117 5' -58.3 NC_002794.1 + 48215 0.79 0.209691
Target:  5'- gAGGUAGAGGCAGagcaGGCGGccgccaucguUCGGCCGc -3'
miRNA:   3'- -UCCAUCUCCGUCga--CCGCU----------AGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 48432 0.66 0.852444
Target:  5'- aGGGcGGAGGUGGC-GGCGGccaucgggacaCAGCCGc -3'
miRNA:   3'- -UCCaUCUCCGUCGaCCGCUa----------GUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 55213 0.67 0.803135
Target:  5'- cGGcGGAGGCc---GGCGGUCgAGCCGa -3'
miRNA:   3'- uCCaUCUCCGucgaCCGCUAG-UCGGC- -5'
11117 5' -58.3 NC_002794.1 + 55283 0.66 0.867423
Target:  5'- cGGUGGcggcgacgaGGGCGGCggcGGCGucgCGGCgGg -3'
miRNA:   3'- uCCAUC---------UCCGUCGa--CCGCua-GUCGgC- -5'
11117 5' -58.3 NC_002794.1 + 55360 0.69 0.680474
Target:  5'- cGGccGAGGCGGCcgaGGCGGccgaggCGGCCGa -3'
miRNA:   3'- uCCauCUCCGUCGa--CCGCUa-----GUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 58744 0.7 0.640568
Target:  5'- cGGGcucaacGGGCAGCUGGCGGaggAGCCGc -3'
miRNA:   3'- -UCCauc---UCCGUCGACCGCUag-UCGGC- -5'
11117 5' -58.3 NC_002794.1 + 68480 0.69 0.67153
Target:  5'- uGGGgcacGGAGGCGGCcgagccggccgugcgGGUGAUCuGCCa -3'
miRNA:   3'- -UCCa---UCUCCGUCGa--------------CCGCUAGuCGGc -5'
11117 5' -58.3 NC_002794.1 + 70197 0.66 0.842294
Target:  5'- uGGUGGAGcggagaucCAGCUcgcccggacggucgGGCGggCGGCCGg -3'
miRNA:   3'- uCCAUCUCc-------GUCGA--------------CCGCuaGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 82042 0.66 0.860032
Target:  5'- -cGUGGGcGGCGGCggcGGCGGcgucguccUCGGCCu -3'
miRNA:   3'- ucCAUCU-CCGUCGa--CCGCU--------AGUCGGc -5'
11117 5' -58.3 NC_002794.1 + 87096 0.69 0.688399
Target:  5'- cGGGUGGGGGUgcaGGCcgGGCGGgugggggugcaGGCCGg -3'
miRNA:   3'- -UCCAUCUCCG---UCGa-CCGCUag---------UCGGC- -5'
11117 5' -58.3 NC_002794.1 + 87138 0.69 0.688399
Target:  5'- cGGGUGGGGGUgcaGGCcgGGCGGgugggggugcaGGCCGg -3'
miRNA:   3'- -UCCAUCUCCG---UCGa-CCGCUag---------UCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.