miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11117 5' -58.3 NC_002794.1 + 87180 0.69 0.688399
Target:  5'- cGGGUGGGGGUgcaGGCcgGGCGGgugggggugcaGGCCGg -3'
miRNA:   3'- -UCCAUCUCCG---UCGa-CCGCUag---------UCGGC- -5'
11117 5' -58.3 NC_002794.1 + 87222 0.69 0.688399
Target:  5'- cGGGUGGGGGUgcaGGCcgGGCGGgugggggugcaGGCCGg -3'
miRNA:   3'- -UCCAUCUCCG---UCGa-CCGCUag---------UCGGC- -5'
11117 5' -58.3 NC_002794.1 + 90326 0.66 0.867423
Target:  5'- --cUGGccGCAGCUGGUGGccgUCGGCCu -3'
miRNA:   3'- uccAUCucCGUCGACCGCU---AGUCGGc -5'
11117 5' -58.3 NC_002794.1 + 91867 0.72 0.512423
Target:  5'- aGGGUcccGGGGGUGGC-GGCGG-CGGCCGc -3'
miRNA:   3'- -UCCA---UCUCCGUCGaCCGCUaGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 94056 0.67 0.794354
Target:  5'- cGGUgcGGGGGCGGCggggGGCGAg-GGCa- -3'
miRNA:   3'- uCCA--UCUCCGUCGa---CCGCUagUCGgc -5'
11117 5' -58.3 NC_002794.1 + 94204 0.66 0.860032
Target:  5'- cGGUugcgcuugugacGGuGGCGGCgacgGGCGggCgGGCCGg -3'
miRNA:   3'- uCCA------------UCuCCGUCGa---CCGCuaG-UCGGC- -5'
11117 5' -58.3 NC_002794.1 + 94463 0.66 0.852444
Target:  5'- cGGUGGcgacggcaacGGCGGC-GGCGGacgCGGCCGc -3'
miRNA:   3'- uCCAUCu---------CCGUCGaCCGCUa--GUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 95754 0.68 0.748515
Target:  5'- uGGUAcucgcGGGGCGGCggccGCGAcggCGGCCGg -3'
miRNA:   3'- uCCAU-----CUCCGUCGac--CGCUa--GUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 95848 0.69 0.690376
Target:  5'- cGGccggGGAGGCGGCgGGCG---GGCCGu -3'
miRNA:   3'- uCCa---UCUCCGUCGaCCGCuagUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 96913 0.67 0.776381
Target:  5'- gAGGUggcGGAGGC-GCcGGCGA-CAGCaCGc -3'
miRNA:   3'- -UCCA---UCUCCGuCGaCCGCUaGUCG-GC- -5'
11117 5' -58.3 NC_002794.1 + 99337 0.69 0.710032
Target:  5'- uGGcAGAuGCuGCUGGCGAUCcGUCGg -3'
miRNA:   3'- uCCaUCUcCGuCGACCGCUAGuCGGC- -5'
11117 5' -58.3 NC_002794.1 + 101643 0.67 0.811768
Target:  5'- gAGcGUGGgcGGGCgGGC-GGCGGUUAGCCc -3'
miRNA:   3'- -UC-CAUC--UCCG-UCGaCCGCUAGUCGGc -5'
11117 5' -58.3 NC_002794.1 + 103448 0.67 0.820245
Target:  5'- uGGaAGAGcuGCGGCUGGUuGAUggaCAGCCGc -3'
miRNA:   3'- uCCaUCUC--CGUCGACCG-CUA---GUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 107880 0.68 0.719769
Target:  5'- ---cGGAGGCGGCgcGGCGGgugCGGCUGc -3'
miRNA:   3'- uccaUCUCCGUCGa-CCGCUa--GUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 109148 0.66 0.852444
Target:  5'- gAGGgGGAGGCGGgggagaUGGCGAcgagCGGCgGu -3'
miRNA:   3'- -UCCaUCUCCGUCg-----ACCGCUa---GUCGgC- -5'
11117 5' -58.3 NC_002794.1 + 110483 0.71 0.580656
Target:  5'- gGGGUagAGAGGCGGUggcGGCGccuggagaaaGUCGGUCGa -3'
miRNA:   3'- -UCCA--UCUCCGUCGa--CCGC----------UAGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 115041 0.66 0.852444
Target:  5'- cAGGUGcgaccGGGCGGCgGGCGG-CAGCg- -3'
miRNA:   3'- -UCCAUc----UCCGUCGaCCGCUaGUCGgc -5'
11117 5' -58.3 NC_002794.1 + 115177 0.74 0.421405
Target:  5'- uGGUAGAcGGCccgguGCcGGCGGUCgAGCCGg -3'
miRNA:   3'- uCCAUCU-CCGu----CGaCCGCUAG-UCGGC- -5'
11117 5' -58.3 NC_002794.1 + 115917 0.66 0.852444
Target:  5'- gGGGUGGAcuuGGC-GC-GGCGGcgGGCCGg -3'
miRNA:   3'- -UCCAUCU---CCGuCGaCCGCUagUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 116071 0.66 0.844664
Target:  5'- gGGGUcgcGGAGcGCucGGCgcGGCGGUCGucGCCGg -3'
miRNA:   3'- -UCCA---UCUC-CG--UCGa-CCGCUAGU--CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.