miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11117 5' -58.3 NC_002794.1 + 191880 0.69 0.680474
Target:  5'- cGGaGGGGGCGGCggaGGCGGgaUCGGCa- -3'
miRNA:   3'- uCCaUCUCCGUCGa--CCGCU--AGUCGgc -5'
11117 5' -58.3 NC_002794.1 + 190973 0.69 0.670535
Target:  5'- cGGGgcagcagAGcAGGCAGCgcGGCGAcggcgucgcgaUCGGCCGu -3'
miRNA:   3'- -UCCa------UC-UCCGUCGa-CCGCU-----------AGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 189303 0.71 0.580656
Target:  5'- gAGGUGGucgugcaguucGGGCAGCUGGuCGGggggCAGCa- -3'
miRNA:   3'- -UCCAUC-----------UCCGUCGACC-GCUa---GUCGgc -5'
11117 5' -58.3 NC_002794.1 + 183593 0.72 0.541328
Target:  5'- cGGUGGGGGCGGaggggGGCcgcGcgCGGCCGg -3'
miRNA:   3'- uCCAUCUCCGUCga---CCG---CuaGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 182299 0.72 0.531628
Target:  5'- cGGGUGGAcgggcagacgGGCGGacgGGCGGUCGGgCGg -3'
miRNA:   3'- -UCCAUCU----------CCGUCga-CCGCUAGUCgGC- -5'
11117 5' -58.3 NC_002794.1 + 179692 0.69 0.710032
Target:  5'- cGGUGGcGGCGGCgacggUGGCGAc--GCCGg -3'
miRNA:   3'- uCCAUCuCCGUCG-----ACCGCUaguCGGC- -5'
11117 5' -58.3 NC_002794.1 + 159895 0.67 0.803135
Target:  5'- gAGGgcGGGGUAGCgaagGGUaGGUgGGUCGg -3'
miRNA:   3'- -UCCauCUCCGUCGa---CCG-CUAgUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 158747 0.67 0.820245
Target:  5'- cGGGUAGuGuGCGcGCacgUGGUGAUCGGuuGa -3'
miRNA:   3'- -UCCAUCuC-CGU-CG---ACCGCUAGUCggC- -5'
11117 5' -58.3 NC_002794.1 + 153131 0.68 0.767204
Target:  5'- cGGUGGcGGCAGCgGGUccgGAaCGGCCu -3'
miRNA:   3'- uCCAUCuCCGUCGaCCG---CUaGUCGGc -5'
11117 5' -58.3 NC_002794.1 + 146872 0.69 0.690376
Target:  5'- cGGGUGGGGG--GC--GCGGUCGGCCGa -3'
miRNA:   3'- -UCCAUCUCCguCGacCGCUAGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 143370 0.67 0.785434
Target:  5'- aGGGUgAGGGGCAGauaGGagagGGUCAGCUGc -3'
miRNA:   3'- -UCCA-UCUCCGUCga-CCg---CUAGUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 142400 0.67 0.820245
Target:  5'- cGGUGcAGGCGGCgucGGCGG-C-GCCGg -3'
miRNA:   3'- uCCAUcUCCGUCGa--CCGCUaGuCGGC- -5'
11117 5' -58.3 NC_002794.1 + 142343 0.68 0.767204
Target:  5'- cGGcGGAGGCGGCggaggcGGCGGaggCGGCgGa -3'
miRNA:   3'- uCCaUCUCCGUCGa-----CCGCUa--GUCGgC- -5'
11117 5' -58.3 NC_002794.1 + 142309 0.69 0.660565
Target:  5'- cAGGUggcGGAGGCGGC-GGCGcaggCGGCgGa -3'
miRNA:   3'- -UCCA---UCUCCGUCGaCCGCua--GUCGgC- -5'
11117 5' -58.3 NC_002794.1 + 140008 0.7 0.650574
Target:  5'- cGGGUGGAGGCcGCggaGGCcg-CGGCCc -3'
miRNA:   3'- -UCCAUCUCCGuCGa--CCGcuaGUCGGc -5'
11117 5' -58.3 NC_002794.1 + 137940 0.67 0.803135
Target:  5'- gAGcUGGAGGCAGC-GGCGGaugcguUC-GCCGa -3'
miRNA:   3'- -UCcAUCUCCGUCGaCCGCU------AGuCGGC- -5'
11117 5' -58.3 NC_002794.1 + 132117 0.68 0.739019
Target:  5'- gGGGUGGAcGGuCGGCUGGCaGGUacucGCUGg -3'
miRNA:   3'- -UCCAUCU-CC-GUCGACCG-CUAgu--CGGC- -5'
11117 5' -58.3 NC_002794.1 + 129067 0.69 0.690376
Target:  5'- cGGUGuGucGCGGCUGGCGG-CGGaCCGu -3'
miRNA:   3'- uCCAU-CucCGUCGACCGCUaGUC-GGC- -5'
11117 5' -58.3 NC_002794.1 + 125730 0.69 0.678489
Target:  5'- cGGGaGGAGGCGGa-GGCGGgccgcgggacggCGGCCGg -3'
miRNA:   3'- -UCCaUCUCCGUCgaCCGCUa-----------GUCGGC- -5'
11117 5' -58.3 NC_002794.1 + 120990 0.66 0.852444
Target:  5'- cGuGUAGcGGCGGCgGGCcauggccgagGGUCGGCCu -3'
miRNA:   3'- uC-CAUCuCCGUCGaCCG----------CUAGUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.