Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11117 | 5' | -58.3 | NC_002794.1 | + | 48215 | 0.79 | 0.209691 |
Target: 5'- gAGGUAGAGGCAGagcaGGCGGccgccaucguUCGGCCGc -3' miRNA: 3'- -UCCAUCUCCGUCga--CCGCU----------AGUCGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 70197 | 0.66 | 0.842294 |
Target: 5'- uGGUGGAGcggagaucCAGCUcgcccggacggucgGGCGggCGGCCGg -3' miRNA: 3'- uCCAUCUCc-------GUCGA--------------CCGCuaGUCGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 37751 | 0.66 | 0.8367 |
Target: 5'- cGGcGGcgcGGCGGCgccGGCGGgagCGGCCGu -3' miRNA: 3'- uCCaUCu--CCGUCGa--CCGCUa--GUCGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 142400 | 0.67 | 0.820245 |
Target: 5'- cGGUGcAGGCGGCgucGGCGG-C-GCCGg -3' miRNA: 3'- uCCAUcUCCGUCGa--CCGCUaGuCGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 158747 | 0.67 | 0.820245 |
Target: 5'- cGGGUAGuGuGCGcGCacgUGGUGAUCGGuuGa -3' miRNA: 3'- -UCCAUCuC-CGU-CG---ACCGCUAGUCggC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 103448 | 0.67 | 0.820245 |
Target: 5'- uGGaAGAGcuGCGGCUGGUuGAUggaCAGCCGc -3' miRNA: 3'- uCCaUCUC--CGUCGACCG-CUA---GUCGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 37511 | 0.67 | 0.815178 |
Target: 5'- cGuGUGGucGCgcagcaccacgucccGGCUGGCGAaCAGCCGc -3' miRNA: 3'- uC-CAUCucCG---------------UCGACCGCUaGUCGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 37886 | 0.67 | 0.811768 |
Target: 5'- cGGcGGGGGCGGUggcGGCGG-CAGCgGc -3' miRNA: 3'- uCCaUCUCCGUCGa--CCGCUaGUCGgC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 101643 | 0.67 | 0.811768 |
Target: 5'- gAGcGUGGgcGGGCgGGC-GGCGGUUAGCCc -3' miRNA: 3'- -UC-CAUC--UCCG-UCGaCCGCUAGUCGGc -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 120990 | 0.66 | 0.852444 |
Target: 5'- cGuGUAGcGGCGGCgGGCcauggccgagGGUCGGCCu -3' miRNA: 3'- uC-CAUCuCCGUCGaCCG----------CUAGUCGGc -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 116071 | 0.66 | 0.844664 |
Target: 5'- gGGGUcgcGGAGcGCucGGCgcGGCGGUCGucGCCGg -3' miRNA: 3'- -UCCA---UCUC-CG--UCGa-CCGCUAGU--CGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 38155 | 0.66 | 0.844664 |
Target: 5'- gAGGUAGgcgagcAGGCGGCUG-CGcUCGGCg- -3' miRNA: 3'- -UCCAUC------UCCGUCGACcGCuAGUCGgc -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 94204 | 0.66 | 0.860032 |
Target: 5'- cGGUugcgcuugugacGGuGGCGGCgacgGGCGggCgGGCCGg -3' miRNA: 3'- uCCA------------UCuCCGUCGa---CCGCuaG-UCGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 90326 | 0.66 | 0.867423 |
Target: 5'- --cUGGccGCAGCUGGUGGccgUCGGCCu -3' miRNA: 3'- uccAUCucCGUCGACCGCU---AGUCGGc -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 82042 | 0.66 | 0.860032 |
Target: 5'- -cGUGGGcGGCGGCggcGGCGGcgucguccUCGGCCu -3' miRNA: 3'- ucCAUCU-CCGUCGa--CCGCU--------AGUCGGc -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 115917 | 0.66 | 0.852444 |
Target: 5'- gGGGUGGAcuuGGC-GC-GGCGGcgGGCCGg -3' miRNA: 3'- -UCCAUCU---CCGuCGaCCGCUagUCGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 94463 | 0.66 | 0.852444 |
Target: 5'- cGGUGGcgacggcaacGGCGGC-GGCGGacgCGGCCGc -3' miRNA: 3'- uCCAUCu---------CCGUCGaCCGCUa--GUCGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 48432 | 0.66 | 0.852444 |
Target: 5'- aGGGcGGAGGUGGC-GGCGGccaucgggacaCAGCCGc -3' miRNA: 3'- -UCCaUCUCCGUCGaCCGCUa----------GUCGGC- -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 115041 | 0.66 | 0.852444 |
Target: 5'- cAGGUGcgaccGGGCGGCgGGCGG-CAGCg- -3' miRNA: 3'- -UCCAUc----UCCGUCGaCCGCUaGUCGgc -5' |
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11117 | 5' | -58.3 | NC_002794.1 | + | 109148 | 0.66 | 0.852444 |
Target: 5'- gAGGgGGAGGCGGgggagaUGGCGAcgagCGGCgGu -3' miRNA: 3'- -UCCaUCUCCGUCg-----ACCGCUa---GUCGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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