miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11118 3' -53.3 NC_002794.1 + 12625 0.66 0.982172
Target:  5'- cUGggGCCgcuucgagcaCAccUACGACGGGUaccGCACc -3'
miRNA:   3'- -ACuuCGG----------GUacAUGCUGCCCAa--CGUG- -5'
11118 3' -53.3 NC_002794.1 + 58061 0.66 0.98007
Target:  5'- gGcGGCCCcgGcgGCGGCGGGacggGCGg -3'
miRNA:   3'- aCuUCGGGuaCa-UGCUGCCCaa--CGUg -5'
11118 3' -53.3 NC_002794.1 + 115898 0.66 0.977789
Target:  5'- cGGAGCgCGggggGUuCGugGGGUggacuugGCGCg -3'
miRNA:   3'- aCUUCGgGUa---CAuGCugCCCAa------CGUG- -5'
11118 3' -53.3 NC_002794.1 + 90174 0.66 0.972658
Target:  5'- gUGAAGCCUccGaggACGcGCGGGg-GCACg -3'
miRNA:   3'- -ACUUCGGGuaCa--UGC-UGCCCaaCGUG- -5'
11118 3' -53.3 NC_002794.1 + 69944 0.67 0.966722
Target:  5'- --cAGCCCAcgucgGUGCc-CGGGUUGUGCg -3'
miRNA:   3'- acuUCGGGUa----CAUGcuGCCCAACGUG- -5'
11118 3' -53.3 NC_002794.1 + 128461 0.67 0.966722
Target:  5'- cGGAGCCCAgg-ACGAccggucacCGGGUcGCGg -3'
miRNA:   3'- aCUUCGGGUacaUGCU--------GCCCAaCGUg -5'
11118 3' -53.3 NC_002794.1 + 77651 0.67 0.959929
Target:  5'- ---cGCCCAccUGUGCGgcccGCGGGUcUGCGg -3'
miRNA:   3'- acuuCGGGU--ACAUGC----UGCCCA-ACGUg -5'
11118 3' -53.3 NC_002794.1 + 139637 0.67 0.956197
Target:  5'- cGAAGCCCAcgGUGCaGCuGGUguaGUACa -3'
miRNA:   3'- aCUUCGGGUa-CAUGcUGcCCAa--CGUG- -5'
11118 3' -53.3 NC_002794.1 + 10868 0.67 0.956197
Target:  5'- gGAAGCCgagCGUGaccgACGACGGGcggGCGg -3'
miRNA:   3'- aCUUCGG---GUACa---UGCUGCCCaa-CGUg -5'
11118 3' -53.3 NC_002794.1 + 188535 0.67 0.956197
Target:  5'- cGAAGCgCAggUGUcgcgGCGGCGGGUacUGCu- -3'
miRNA:   3'- aCUUCGgGU--ACA----UGCUGCCCA--ACGug -5'
11118 3' -53.3 NC_002794.1 + 189028 0.67 0.95464
Target:  5'- aGGAGCCgCucgaccgccaGCGGCGGGcUGCGCg -3'
miRNA:   3'- aCUUCGG-Guaca------UGCUGCCCaACGUG- -5'
11118 3' -53.3 NC_002794.1 + 91035 0.68 0.938937
Target:  5'- cUGGgcGGCCCucgggGUG-GACGGGgcGCGCg -3'
miRNA:   3'- -ACU--UCGGGua---CAUgCUGCCCaaCGUG- -5'
11118 3' -53.3 NC_002794.1 + 128081 0.69 0.911943
Target:  5'- cGAauGGCCCGaGUcgGCGACGGGgaGCuCg -3'
miRNA:   3'- aCU--UCGGGUaCA--UGCUGCCCaaCGuG- -5'
11118 3' -53.3 NC_002794.1 + 92538 0.69 0.911943
Target:  5'- aUGAAGUCCAaccGCGACGaGGUggccgGCGCc -3'
miRNA:   3'- -ACUUCGGGUacaUGCUGC-CCAa----CGUG- -5'
11118 3' -53.3 NC_002794.1 + 184489 0.7 0.886019
Target:  5'- cGggGCCCcgG-ACGccCGGGcgGCGCg -3'
miRNA:   3'- aCuuCGGGuaCaUGCu-GCCCaaCGUG- -5'
11118 3' -53.3 NC_002794.1 + 89410 0.71 0.832091
Target:  5'- gUGGAGCgCCGgcgccaucaucUGUcaACGACGGGagUUGCACc -3'
miRNA:   3'- -ACUUCG-GGU-----------ACA--UGCUGCCC--AACGUG- -5'
11118 3' -53.3 NC_002794.1 + 151033 0.72 0.814912
Target:  5'- gGucGCCCGUcugAUGACGGGcgagUGCACg -3'
miRNA:   3'- aCuuCGGGUAca-UGCUGCCCa---ACGUG- -5'
11118 3' -53.3 NC_002794.1 + 99651 0.72 0.797058
Target:  5'- cGggGCUgucUGUACGACGGGgaGCGg -3'
miRNA:   3'- aCuuCGGgu-ACAUGCUGCCCaaCGUg -5'
11118 3' -53.3 NC_002794.1 + 61745 0.72 0.77766
Target:  5'- gGAAGCCCgcgcgagGUGUGCGAgGGGggGUc- -3'
miRNA:   3'- aCUUCGGG-------UACAUGCUgCCCaaCGug -5'
11118 3' -53.3 NC_002794.1 + 16159 0.73 0.756713
Target:  5'- cGGAGCCggCAUGaACGGCGGGUggccgaccgugaacUGUACg -3'
miRNA:   3'- aCUUCGG--GUACaUGCUGCCCA--------------ACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.