miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11118 5' -57.9 NC_002794.1 + 119363 0.66 0.897437
Target:  5'- gCGGacCUCCUCGuucgCGugGuCGAGCUGg -3'
miRNA:   3'- -GCCacGAGGAGCca--GCugU-GCUCGAC- -5'
11118 5' -57.9 NC_002794.1 + 117878 0.66 0.894913
Target:  5'- gGGaGCUCaggaugguguaGGUCGACACGgccAGCUGg -3'
miRNA:   3'- gCCaCGAGgag--------CCAGCUGUGC---UCGAC- -5'
11118 5' -57.9 NC_002794.1 + 18815 0.66 0.891062
Target:  5'- aCGGgucgGCgaCCUCGGcCGGCGCgGAGgaGa -3'
miRNA:   3'- -GCCa---CGa-GGAGCCaGCUGUG-CUCgaC- -5'
11118 5' -57.9 NC_002794.1 + 114587 0.66 0.884475
Target:  5'- gGGUGCUCgUCGcUCuGgACGAGCUc -3'
miRNA:   3'- gCCACGAGgAGCcAGcUgUGCUCGAc -5'
11118 5' -57.9 NC_002794.1 + 127793 0.66 0.877679
Target:  5'- uCGGccgGCUCCga-GUCGACGcCGAGCg- -3'
miRNA:   3'- -GCCa--CGAGGagcCAGCUGU-GCUCGac -5'
11118 5' -57.9 NC_002794.1 + 129238 0.67 0.863482
Target:  5'- aCGGgcgGCUCCggCGGacUCGGguCGAGCg- -3'
miRNA:   3'- -GCCa--CGAGGa-GCC--AGCUguGCUCGac -5'
11118 5' -57.9 NC_002794.1 + 119491 0.67 0.85609
Target:  5'- uCGGcUGCgUCCUCGGggucgucggCGGCGCgGAGCc- -3'
miRNA:   3'- -GCC-ACG-AGGAGCCa--------GCUGUG-CUCGac -5'
11118 5' -57.9 NC_002794.1 + 166353 0.68 0.806292
Target:  5'- uGGcgGUUCCUCGuucagacgucuuUCGAUACGGGCUGu -3'
miRNA:   3'- gCCa-CGAGGAGCc-----------AGCUGUGCUCGAC- -5'
11118 5' -57.9 NC_002794.1 + 111139 0.68 0.787177
Target:  5'- cCGGUGCUCCacgCGGUagcgggucaggcaGACGCGGuGCa- -3'
miRNA:   3'- -GCCACGAGGa--GCCAg------------CUGUGCU-CGac -5'
11118 5' -57.9 NC_002794.1 + 95170 0.68 0.781851
Target:  5'- aCGGUGCgcaagUCCUUGGUgCaGCugGAGaCUGg -3'
miRNA:   3'- -GCCACG-----AGGAGCCA-GcUGugCUC-GAC- -5'
11118 5' -57.9 NC_002794.1 + 153368 0.69 0.763782
Target:  5'- cCGGcUGCgcgcCCUCguGGUCGAUcuguccgaucGCGAGCUGu -3'
miRNA:   3'- -GCC-ACGa---GGAG--CCAGCUG----------UGCUCGAC- -5'
11118 5' -57.9 NC_002794.1 + 151969 0.7 0.716854
Target:  5'- gGGUGCUCCUCGGccCGGgACGuGGUc- -3'
miRNA:   3'- gCCACGAGGAGCCa-GCUgUGC-UCGac -5'
11118 5' -57.9 NC_002794.1 + 112746 0.7 0.707233
Target:  5'- gCGGUGCUCCgCGG-CGGCGggguCGGGgUGa -3'
miRNA:   3'- -GCCACGAGGaGCCaGCUGU----GCUCgAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.