miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11119 3' -56.6 NC_002794.1 + 99592 0.66 0.926955
Target:  5'- aGGG-CGCggCGGCGGcGCGCGc----- -3'
miRNA:   3'- gCCCaGCGa-GCCGCC-UGCGCauauau -5'
11119 3' -56.6 NC_002794.1 + 52928 0.66 0.926955
Target:  5'- --cGUCGCUCGGCcGGcACGCGa----- -3'
miRNA:   3'- gccCAGCGAGCCG-CC-UGCGCauauau -5'
11119 3' -56.6 NC_002794.1 + 153045 0.66 0.910358
Target:  5'- gCGGGUCcCUCgGGCGGACG-GUc---- -3'
miRNA:   3'- -GCCCAGcGAG-CCGCCUGCgCAuauau -5'
11119 3' -56.6 NC_002794.1 + 107040 0.67 0.904373
Target:  5'- uGGGgaccccCGCgucggaggCGGCGGGCGCGg----- -3'
miRNA:   3'- gCCCa-----GCGa-------GCCGCCUGCGCauauau -5'
11119 3' -56.6 NC_002794.1 + 91247 0.67 0.885093
Target:  5'- uCGGGcugCGCUC-GCGGACGcCGUucGUGg -3'
miRNA:   3'- -GCCCa--GCGAGcCGCCUGC-GCAuaUAU- -5'
11119 3' -56.6 NC_002794.1 + 128112 0.68 0.863896
Target:  5'- aCGGGggGCUCGGCGGAuacccucaucgUGCGa----- -3'
miRNA:   3'- -GCCCagCGAGCCGCCU-----------GCGCauauau -5'
11119 3' -56.6 NC_002794.1 + 142143 0.68 0.863896
Target:  5'- cCGGGUCa--CGGCGGAgGCGgcgGUAg- -3'
miRNA:   3'- -GCCCAGcgaGCCGCCUgCGCa--UAUau -5'
11119 3' -56.6 NC_002794.1 + 149291 0.68 0.840909
Target:  5'- gCGGcUCGCUcaCGGgGGGCGgGUGUAg- -3'
miRNA:   3'- -GCCcAGCGA--GCCgCCUGCgCAUAUau -5'
11119 3' -56.6 NC_002794.1 + 65923 0.68 0.840909
Target:  5'- --cGUCGCcggCGGCGGugGCGUcgGc- -3'
miRNA:   3'- gccCAGCGa--GCCGCCugCGCAuaUau -5'
11119 3' -56.6 NC_002794.1 + 78438 0.68 0.832877
Target:  5'- -cGGUCGC--GGCGGACGCGg----- -3'
miRNA:   3'- gcCCAGCGagCCGCCUGCGCauauau -5'
11119 3' -56.6 NC_002794.1 + 91876 0.69 0.824671
Target:  5'- gGGGUgGCggCGGCGGcCGCGa----- -3'
miRNA:   3'- gCCCAgCGa-GCCGCCuGCGCauauau -5'
11119 3' -56.6 NC_002794.1 + 102709 0.69 0.824671
Target:  5'- cCGGGcCGC-CGGaCGGGCGCGc----- -3'
miRNA:   3'- -GCCCaGCGaGCC-GCCUGCGCauauau -5'
11119 3' -56.6 NC_002794.1 + 71788 0.69 0.816298
Target:  5'- gCGGcgaGUCGCccccCGGCGGGCGCGg----- -3'
miRNA:   3'- -GCC---CAGCGa---GCCGCCUGCGCauauau -5'
11119 3' -56.6 NC_002794.1 + 155094 0.69 0.807765
Target:  5'- aGGGUCuGCUCGGCauACGCGagcAUAUAc -3'
miRNA:   3'- gCCCAG-CGAGCCGccUGCGCa--UAUAU- -5'
11119 3' -56.6 NC_002794.1 + 106349 0.69 0.807765
Target:  5'- cCGGGUCGa-CGGCGGGCGgGc----- -3'
miRNA:   3'- -GCCCAGCgaGCCGCCUGCgCauauau -5'
11119 3' -56.6 NC_002794.1 + 55306 0.69 0.799081
Target:  5'- gCGGcGUCGC--GGCGGGCGCGg----- -3'
miRNA:   3'- -GCC-CAGCGagCCGCCUGCGCauauau -5'
11119 3' -56.6 NC_002794.1 + 18815 0.69 0.781289
Target:  5'- aCGGGUCGgcgacCUCGGCcGGCGCGg----- -3'
miRNA:   3'- -GCCCAGC-----GAGCCGcCUGCGCauauau -5'
11119 3' -56.6 NC_002794.1 + 187464 0.7 0.744243
Target:  5'- uCGGcGUCGCUCGGCGcGCGCc------ -3'
miRNA:   3'- -GCC-CAGCGAGCCGCcUGCGcauauau -5'
11119 3' -56.6 NC_002794.1 + 108875 0.71 0.695896
Target:  5'- cCGGGUCcaaCUCGGCGuGCGCG-GUGUAc -3'
miRNA:   3'- -GCCCAGc--GAGCCGCcUGCGCaUAUAU- -5'
11119 3' -56.6 NC_002794.1 + 119505 0.71 0.695896
Target:  5'- gGGGUCG-UCGGCGG-CGCGg----- -3'
miRNA:   3'- gCCCAGCgAGCCGCCuGCGCauauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.