Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11119 | 3' | -56.6 | NC_002794.1 | + | 99592 | 0.66 | 0.926955 |
Target: 5'- aGGG-CGCggCGGCGGcGCGCGc----- -3' miRNA: 3'- gCCCaGCGa-GCCGCC-UGCGCauauau -5' |
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11119 | 3' | -56.6 | NC_002794.1 | + | 52928 | 0.66 | 0.926955 |
Target: 5'- --cGUCGCUCGGCcGGcACGCGa----- -3' miRNA: 3'- gccCAGCGAGCCG-CC-UGCGCauauau -5' |
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11119 | 3' | -56.6 | NC_002794.1 | + | 153045 | 0.66 | 0.910358 |
Target: 5'- gCGGGUCcCUCgGGCGGACG-GUc---- -3' miRNA: 3'- -GCCCAGcGAG-CCGCCUGCgCAuauau -5' |
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11119 | 3' | -56.6 | NC_002794.1 | + | 91247 | 0.67 | 0.885093 |
Target: 5'- uCGGGcugCGCUC-GCGGACGcCGUucGUGg -3' miRNA: 3'- -GCCCa--GCGAGcCGCCUGC-GCAuaUAU- -5' |
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11119 | 3' | -56.6 | NC_002794.1 | + | 107040 | 0.67 | 0.904373 |
Target: 5'- uGGGgaccccCGCgucggaggCGGCGGGCGCGg----- -3' miRNA: 3'- gCCCa-----GCGa-------GCCGCCUGCGCauauau -5' |
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11119 | 3' | -56.6 | NC_002794.1 | + | 78438 | 0.68 | 0.832877 |
Target: 5'- -cGGUCGC--GGCGGACGCGg----- -3' miRNA: 3'- gcCCAGCGagCCGCCUGCGCauauau -5' |
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11119 | 3' | -56.6 | NC_002794.1 | + | 65923 | 0.68 | 0.840909 |
Target: 5'- --cGUCGCcggCGGCGGugGCGUcgGc- -3' miRNA: 3'- gccCAGCGa--GCCGCCugCGCAuaUau -5' |
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11119 | 3' | -56.6 | NC_002794.1 | + | 149291 | 0.68 | 0.840909 |
Target: 5'- gCGGcUCGCUcaCGGgGGGCGgGUGUAg- -3' miRNA: 3'- -GCCcAGCGA--GCCgCCUGCgCAUAUau -5' |
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11119 | 3' | -56.6 | NC_002794.1 | + | 128112 | 0.68 | 0.863896 |
Target: 5'- aCGGGggGCUCGGCGGAuacccucaucgUGCGa----- -3' miRNA: 3'- -GCCCagCGAGCCGCCU-----------GCGCauauau -5' |
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11119 | 3' | -56.6 | NC_002794.1 | + | 142143 | 0.68 | 0.863896 |
Target: 5'- cCGGGUCa--CGGCGGAgGCGgcgGUAg- -3' miRNA: 3'- -GCCCAGcgaGCCGCCUgCGCa--UAUau -5' |
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11119 | 3' | -56.6 | NC_002794.1 | + | 55306 | 0.69 | 0.799081 |
Target: 5'- gCGGcGUCGC--GGCGGGCGCGg----- -3' miRNA: 3'- -GCC-CAGCGagCCGCCUGCGCauauau -5' |
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11119 | 3' | -56.6 | NC_002794.1 | + | 18815 | 0.69 | 0.781289 |
Target: 5'- aCGGGUCGgcgacCUCGGCcGGCGCGg----- -3' miRNA: 3'- -GCCCAGC-----GAGCCGcCUGCGCauauau -5' |
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11119 | 3' | -56.6 | NC_002794.1 | + | 106349 | 0.69 | 0.807765 |
Target: 5'- cCGGGUCGa-CGGCGGGCGgGc----- -3' miRNA: 3'- -GCCCAGCgaGCCGCCUGCgCauauau -5' |
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11119 | 3' | -56.6 | NC_002794.1 | + | 155094 | 0.69 | 0.807765 |
Target: 5'- aGGGUCuGCUCGGCauACGCGagcAUAUAc -3' miRNA: 3'- gCCCAG-CGAGCCGccUGCGCa--UAUAU- -5' |
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11119 | 3' | -56.6 | NC_002794.1 | + | 71788 | 0.69 | 0.816298 |
Target: 5'- gCGGcgaGUCGCccccCGGCGGGCGCGg----- -3' miRNA: 3'- -GCC---CAGCGa---GCCGCCUGCGCauauau -5' |
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11119 | 3' | -56.6 | NC_002794.1 | + | 91876 | 0.69 | 0.824671 |
Target: 5'- gGGGUgGCggCGGCGGcCGCGa----- -3' miRNA: 3'- gCCCAgCGa-GCCGCCuGCGCauauau -5' |
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11119 | 3' | -56.6 | NC_002794.1 | + | 102709 | 0.69 | 0.824671 |
Target: 5'- cCGGGcCGC-CGGaCGGGCGCGc----- -3' miRNA: 3'- -GCCCaGCGaGCC-GCCUGCGCauauau -5' |
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11119 | 3' | -56.6 | NC_002794.1 | + | 187464 | 0.7 | 0.744243 |
Target: 5'- uCGGcGUCGCUCGGCGcGCGCc------ -3' miRNA: 3'- -GCC-CAGCGAGCCGCcUGCGcauauau -5' |
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11119 | 3' | -56.6 | NC_002794.1 | + | 108875 | 0.71 | 0.695896 |
Target: 5'- cCGGGUCcaaCUCGGCGuGCGCG-GUGUAc -3' miRNA: 3'- -GCCCAGc--GAGCCGCcUGCGCaUAUAU- -5' |
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11119 | 3' | -56.6 | NC_002794.1 | + | 119505 | 0.71 | 0.695896 |
Target: 5'- gGGGUCG-UCGGCGG-CGCGg----- -3' miRNA: 3'- gCCCAGCgAGCCGCCuGCGCauauau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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