miRNA display CGI


Results 1 - 20 of 428 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11120 5' -63.3 NC_002794.1 + 193182 0.66 0.710259
Target:  5'- cGCCGCgCcAGCGUgUCCaGGUCGugCg -3'
miRNA:   3'- cCGGCG-GcUCGCGaAGGgCCGGCugG- -5'
11120 5' -63.3 NC_002794.1 + 42039 0.66 0.710259
Target:  5'- uGGUguucaUGCgGAGCGCgugCCagaugauguUGGCCGACUg -3'
miRNA:   3'- -CCG-----GCGgCUCGCGaa-GG---------GCCGGCUGG- -5'
11120 5' -63.3 NC_002794.1 + 154333 0.66 0.710259
Target:  5'- cGGUCGucCCGGGUGC--CgCGGCCGAgCu -3'
miRNA:   3'- -CCGGC--GGCUCGCGaaGgGCCGGCUgG- -5'
11120 5' -63.3 NC_002794.1 + 131019 0.66 0.710259
Target:  5'- gGGUCGgUGGucGUGCggCgCGGCCGGCUg -3'
miRNA:   3'- -CCGGCgGCU--CGCGaaGgGCCGGCUGG- -5'
11120 5' -63.3 NC_002794.1 + 81538 0.66 0.710259
Target:  5'- --gCGCuCGAGCGCUggaCGGCUGccGCCg -3'
miRNA:   3'- ccgGCG-GCUCGCGAaggGCCGGC--UGG- -5'
11120 5' -63.3 NC_002794.1 + 183160 0.66 0.710259
Target:  5'- cGCgGCCGGGCug--CCCGaGCCGGUCg -3'
miRNA:   3'- cCGgCGGCUCGcgaaGGGC-CGGCUGG- -5'
11120 5' -63.3 NC_002794.1 + 57545 0.66 0.710259
Target:  5'- cGCCGUcaCGGccaucGCGCaccacgccaUCCUGGCCGACUu -3'
miRNA:   3'- cCGGCG--GCU-----CGCGa--------AGGGCCGGCUGG- -5'
11120 5' -63.3 NC_002794.1 + 135487 0.66 0.710259
Target:  5'- cGCCGUCGAcGCGCgcgggCCCGauGCCcgcacACCg -3'
miRNA:   3'- cCGGCGGCU-CGCGaa---GGGC--CGGc----UGG- -5'
11120 5' -63.3 NC_002794.1 + 121257 0.66 0.710259
Target:  5'- cGCCGCCGcGGCcucgGCaccgUCCUGGCUccgGAUCg -3'
miRNA:   3'- cCGGCGGC-UCG----CGa---AGGGCCGG---CUGG- -5'
11120 5' -63.3 NC_002794.1 + 145594 0.66 0.710259
Target:  5'- cGGCCggcucccgcggaGUCGGGCGCgacgaggagCUCGGCCcggagaucgGACCc -3'
miRNA:   3'- -CCGG------------CGGCUCGCGaa-------GGGCCGG---------CUGG- -5'
11120 5' -63.3 NC_002794.1 + 151889 0.66 0.710259
Target:  5'- uGGCCcUCGAuucgGCGCcccagagCCUGGCCGAgCu -3'
miRNA:   3'- -CCGGcGGCU----CGCGaa-----GGGCCGGCUgG- -5'
11120 5' -63.3 NC_002794.1 + 192399 0.66 0.709334
Target:  5'- cGCCgcGCCGGGguagucgaaacgcCGCgacgggUCCgCGGCCGGCg -3'
miRNA:   3'- cCGG--CGGCUC-------------GCGa-----AGG-GCCGGCUGg -5'
11120 5' -63.3 NC_002794.1 + 109289 0.66 0.704704
Target:  5'- -uCCGCCGAcGCGCUggccaaCCCgacggucucgacgauGGCCGGgCg -3'
miRNA:   3'- ccGGCGGCU-CGCGAa-----GGG---------------CCGGCUgG- -5'
11120 5' -63.3 NC_002794.1 + 55001 0.66 0.700991
Target:  5'- cGGCgacuCGCCGGGCGUccgcCgCCGcGCCG-CCg -3'
miRNA:   3'- -CCG----GCGGCUCGCGaa--G-GGC-CGGCuGG- -5'
11120 5' -63.3 NC_002794.1 + 183864 0.66 0.700991
Target:  5'- cGGCCGUCGGG-GCca-CCG-CCGACa -3'
miRNA:   3'- -CCGGCGGCUCgCGaagGGCcGGCUGg -5'
11120 5' -63.3 NC_002794.1 + 14992 0.66 0.700991
Target:  5'- cGGCagcaGCuccuCGGGCGg-UCUCGGCUGGCUg -3'
miRNA:   3'- -CCGg---CG----GCUCGCgaAGGGCCGGCUGG- -5'
11120 5' -63.3 NC_002794.1 + 147156 0.66 0.700991
Target:  5'- gGGCCG-CGAGgGCcagCUGGaCCGACUg -3'
miRNA:   3'- -CCGGCgGCUCgCGaagGGCC-GGCUGG- -5'
11120 5' -63.3 NC_002794.1 + 148946 0.66 0.700991
Target:  5'- gGGCU-CCGAGCaacagcuguuGCUgaaacugCagaCGGCCGACCu -3'
miRNA:   3'- -CCGGcGGCUCG----------CGAa------Gg--GCCGGCUGG- -5'
11120 5' -63.3 NC_002794.1 + 82051 0.66 0.700991
Target:  5'- cGGCgGCgGcGGCGUcgUCCuCGGCCucGCCg -3'
miRNA:   3'- -CCGgCGgC-UCGCGa-AGG-GCCGGc-UGG- -5'
11120 5' -63.3 NC_002794.1 + 155911 0.66 0.695405
Target:  5'- cGGCUcgacgugcggaGCCGGGUGCUUgCCGucaccggggcucuucGCCGuCCc -3'
miRNA:   3'- -CCGG-----------CGGCUCGCGAAgGGC---------------CGGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.