miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11123 3' -56 NC_002794.1 + 91895 0.66 0.946078
Target:  5'- --cGACGAgcaguucaCGCCGcAGcaccuGGCCuGGGCCu -3'
miRNA:   3'- guaCUGCUa-------GCGGU-UC-----UCGGuCCCGG- -5'
11123 3' -56 NC_002794.1 + 137562 0.66 0.946078
Target:  5'- aCGUcGCGccgccGUCGCC----GCCGGGGCCg -3'
miRNA:   3'- -GUAcUGC-----UAGCGGuucuCGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 137644 0.66 0.946078
Target:  5'- -cUGGCGggCGCC--GGGCCuccGGcGCCg -3'
miRNA:   3'- guACUGCuaGCGGuuCUCGGu--CC-CGG- -5'
11123 3' -56 NC_002794.1 + 10661 0.66 0.946078
Target:  5'- --cGACGAgCGUCuGGAGCCGccugagcuucguGGGUCu -3'
miRNA:   3'- guaCUGCUaGCGGuUCUCGGU------------CCCGG- -5'
11123 3' -56 NC_002794.1 + 86826 0.66 0.946078
Target:  5'- ---cGCGAccUCGCCGGGAucggGUCGGcGGCCc -3'
miRNA:   3'- guacUGCU--AGCGGUUCU----CGGUC-CCGG- -5'
11123 3' -56 NC_002794.1 + 49360 0.66 0.946078
Target:  5'- ---uGCGAUCGCCGucgauguggaAGAagcgcGCCAGGccGCCg -3'
miRNA:   3'- guacUGCUAGCGGU----------UCU-----CGGUCC--CGG- -5'
11123 3' -56 NC_002794.1 + 34014 0.66 0.946078
Target:  5'- -cUGACGccguccaucAUCGaCC-AGAGCCGccugcugccGGGCCg -3'
miRNA:   3'- guACUGC---------UAGC-GGuUCUCGGU---------CCCGG- -5'
11123 3' -56 NC_002794.1 + 94214 0.66 0.941651
Target:  5'- uGUGACGGUgGCggCGAcGGGCgGgcGGGCCg -3'
miRNA:   3'- gUACUGCUAgCG--GUU-CUCGgU--CCCGG- -5'
11123 3' -56 NC_002794.1 + 120286 0.66 0.941651
Target:  5'- --gGAgcuCGAgcaCGCCGAGc-CCGGGGCCu -3'
miRNA:   3'- guaCU---GCUa--GCGGUUCucGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 8642 0.66 0.941651
Target:  5'- --aGACGugcgCGCCA--AGCUGGGGaCCa -3'
miRNA:   3'- guaCUGCua--GCGGUucUCGGUCCC-GG- -5'
11123 3' -56 NC_002794.1 + 115862 0.66 0.941651
Target:  5'- --gGACG--CGCgAGGGGuCCGGGGCg -3'
miRNA:   3'- guaCUGCuaGCGgUUCUC-GGUCCCGg -5'
11123 3' -56 NC_002794.1 + 12184 0.66 0.941651
Target:  5'- --cGACGc-CGCCGc-GGCCGGGcGCCg -3'
miRNA:   3'- guaCUGCuaGCGGUucUCGGUCC-CGG- -5'
11123 3' -56 NC_002794.1 + 193341 0.66 0.938885
Target:  5'- --aGGCGGUCGUgCGagcaacacagcagccGGuGCCAcGGGCCg -3'
miRNA:   3'- guaCUGCUAGCG-GU---------------UCuCGGU-CCCGG- -5'
11123 3' -56 NC_002794.1 + 121972 0.66 0.936995
Target:  5'- cCGUGcggcuCGGUccCGCCGAGcgcGGCCGGGaGCUg -3'
miRNA:   3'- -GUACu----GCUA--GCGGUUC---UCGGUCC-CGG- -5'
11123 3' -56 NC_002794.1 + 11519 0.66 0.936995
Target:  5'- aCGUGACGAUCGagcugcgggcgaCCGAGGaCCGcGGCUg -3'
miRNA:   3'- -GUACUGCUAGC------------GGUUCUcGGUcCCGG- -5'
11123 3' -56 NC_002794.1 + 118854 0.66 0.936995
Target:  5'- -cUGACGcgcUCGCagAAGu-CCAGGGCCa -3'
miRNA:   3'- guACUGCu--AGCGg-UUCucGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 37973 0.66 0.936517
Target:  5'- uCGUGGuacgagcCGAUCGCgGucAGCC-GGGCCa -3'
miRNA:   3'- -GUACU-------GCUAGCGgUucUCGGuCCCGG- -5'
11123 3' -56 NC_002794.1 + 151200 0.66 0.932109
Target:  5'- aGUGucuGCGcgcCGCCGGcuaccgggucuuGGGCCAGGGCUa -3'
miRNA:   3'- gUAC---UGCua-GCGGUU------------CUCGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 71966 0.66 0.932109
Target:  5'- --cGGCGcAUCaGCCGgucccggcGGAGCCGGaGCCg -3'
miRNA:   3'- guaCUGC-UAG-CGGU--------UCUCGGUCcCGG- -5'
11123 3' -56 NC_002794.1 + 106339 0.66 0.926991
Target:  5'- --cGACGGuUCGCCGGGucgacggcGGgCGGGcGCCg -3'
miRNA:   3'- guaCUGCU-AGCGGUUC--------UCgGUCC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.