Results 41 - 60 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11123 | 3' | -56 | NC_002794.1 | + | 98460 | 0.68 | 0.855768 |
Target: 5'- --aGACGAgCGUCGacgggacggaAGAG-CAGGGCCa -3' miRNA: 3'- guaCUGCUaGCGGU----------UCUCgGUCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 121478 | 0.68 | 0.848021 |
Target: 5'- --aGACGAcCGCCGguucGGAcgcggccuccGCCGGGGCg -3' miRNA: 3'- guaCUGCUaGCGGU----UCU----------CGGUCCCGg -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 25158 | 0.68 | 0.848021 |
Target: 5'- gCGUGAUaggcaGCCAGGcAGCCAGGcaGCCa -3' miRNA: 3'- -GUACUGcuag-CGGUUC-UCGGUCC--CGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 13349 | 0.68 | 0.870667 |
Target: 5'- gGUGGCGG-CGCCccucGCCcGGGCCc -3' miRNA: 3'- gUACUGCUaGCGGuucuCGGuCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 149643 | 0.68 | 0.877104 |
Target: 5'- gCGUGgauGCGGuUCGCCGAggaggccGAGCgGGGGCg -3' miRNA: 3'- -GUAC---UGCU-AGCGGUU-------CUCGgUCCCGg -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 40107 | 0.68 | 0.875688 |
Target: 5'- -uUGACGAcgggggcgcgcgagaGCgGAGAGCCAcGGGCUc -3' miRNA: 3'- guACUGCUag-------------CGgUUCUCGGU-CCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 20398 | 0.68 | 0.884737 |
Target: 5'- --cGGCGGga-CCGGGAG-CGGGGCCa -3' miRNA: 3'- guaCUGCUagcGGUUCUCgGUCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 179938 | 0.68 | 0.884737 |
Target: 5'- --aGACGA-CGUCGcGGGCCGGGGa- -3' miRNA: 3'- guaCUGCUaGCGGUuCUCGGUCCCgg -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 126365 | 0.68 | 0.884737 |
Target: 5'- --cGAUu-UCGCCGcugcguGGGcGCCGGGGCCu -3' miRNA: 3'- guaCUGcuAGCGGU------UCU-CGGUCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 151587 | 0.68 | 0.877808 |
Target: 5'- --cGGCGcgCGCCGcc-GCCGcGGGCCc -3' miRNA: 3'- guaCUGCuaGCGGUucuCGGU-CCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 115321 | 0.68 | 0.877808 |
Target: 5'- --cGcACGGUCGCCGcGGcGUCcGGGCCg -3' miRNA: 3'- guaC-UGCUAGCGGUuCU-CGGuCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 56310 | 0.68 | 0.877808 |
Target: 5'- gGUcGCGGUCGCUGGcGGCCGuGGCCg -3' miRNA: 3'- gUAcUGCUAGCGGUUcUCGGUcCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 71089 | 0.68 | 0.870667 |
Target: 5'- --aGACGAacaGCCGGucGCCGGcGGCCu -3' miRNA: 3'- guaCUGCUag-CGGUUcuCGGUC-CCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 22717 | 0.69 | 0.806577 |
Target: 5'- ---cGCGG-CGCCGAGAGCCGGcgaacGGUCg -3' miRNA: 3'- guacUGCUaGCGGUUCUCGGUC-----CCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 107161 | 0.69 | 0.815203 |
Target: 5'- --cGGCGAgggcCGCCGcuacgcggcGGAGCCGGcGCCg -3' miRNA: 3'- guaCUGCUa---GCGGU---------UCUCGGUCcCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 141432 | 0.69 | 0.815203 |
Target: 5'- --cGGCGGgggCGCCGGGGgcGCCGGGaGCg -3' miRNA: 3'- guaCUGCUa--GCGGUUCU--CGGUCC-CGg -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 116092 | 0.69 | 0.815203 |
Target: 5'- --cGGCGGUCGUC----GCCGGGGUCg -3' miRNA: 3'- guaCUGCUAGCGGuucuCGGUCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 126240 | 0.69 | 0.831964 |
Target: 5'- cCGUGGCGAUCGUggcgcgCGAG-GUCGGcGGCUg -3' miRNA: 3'- -GUACUGCUAGCG------GUUCuCGGUC-CCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 79300 | 0.69 | 0.818609 |
Target: 5'- gCGUGGcCGAgCGCCucGAucucacggccuaccuGAGUCAGGGCCg -3' miRNA: 3'- -GUACU-GCUaGCGG--UU---------------CUCGGUCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 110447 | 0.69 | 0.806577 |
Target: 5'- gGUGGCGGagGCCGGcGAGCCGGcucgucGGCUc -3' miRNA: 3'- gUACUGCUagCGGUU-CUCGGUC------CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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