Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11123 | 3' | -56 | NC_002794.1 | + | 32583 | 0.8 | 0.278487 |
Target: 5'- --cGGCGGU-GCCGGG-GCCGGGGCCg -3' miRNA: 3'- guaCUGCUAgCGGUUCuCGGUCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 145842 | 0.8 | 0.278487 |
Target: 5'- --cGACGGUCGCCAcgcucgacGAGCCgccgAGGGCCg -3' miRNA: 3'- guaCUGCUAGCGGUu-------CUCGG----UCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 14595 | 0.78 | 0.364552 |
Target: 5'- cCGUGGCGAgcgCGCCGggcaccgcgacGGGGCCggagacGGGGCCg -3' miRNA: 3'- -GUACUGCUa--GCGGU-----------UCUCGG------UCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 2265 | 0.77 | 0.380571 |
Target: 5'- --aGGCGAcCGCCGgcccuuauacgGGAGCCGGGGCg -3' miRNA: 3'- guaCUGCUaGCGGU-----------UCUCGGUCCCGg -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 147185 | 0.76 | 0.449152 |
Target: 5'- aCGUGuGCGAgugguugaacucUUGCCGucGGGCCGGGGCCg -3' miRNA: 3'- -GUAC-UGCU------------AGCGGUu-CUCGGUCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 128248 | 0.76 | 0.467341 |
Target: 5'- --aGACGGUCGUCuGGucgcGGUCGGGGCCg -3' miRNA: 3'- guaCUGCUAGCGGuUC----UCGGUCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 149511 | 0.75 | 0.524022 |
Target: 5'- gGUGACGGggucgUCGCCGGGAGCggaccUGGGGCg -3' miRNA: 3'- gUACUGCU-----AGCGGUUCUCG-----GUCCCGg -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 57985 | 0.74 | 0.563228 |
Target: 5'- --cGGCGAgccgacgCGCCAGGccuucgucgccGCCGGGGCCg -3' miRNA: 3'- guaCUGCUa------GCGGUUCu----------CGGUCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 76942 | 0.74 | 0.563228 |
Target: 5'- cCAUGACGAcCGCgGAGAcGCCGuccGGCCg -3' miRNA: 3'- -GUACUGCUaGCGgUUCU-CGGUc--CCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 187493 | 0.74 | 0.553343 |
Target: 5'- --gGACGAggcCGCgCAGGcGGCCAGGGCg -3' miRNA: 3'- guaCUGCUa--GCG-GUUC-UCGGUCCCGg -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 23886 | 0.74 | 0.553343 |
Target: 5'- ---cGCGAaCGCCGAGGGcCCGGGaGCCg -3' miRNA: 3'- guacUGCUaGCGGUUCUC-GGUCC-CGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 70462 | 0.73 | 0.592138 |
Target: 5'- aAUGACGA-CGCC-AGAGCCagcacccgaugucGGGGCa -3' miRNA: 3'- gUACUGCUaGCGGuUCUCGG-------------UCCCGg -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 55250 | 0.73 | 0.593141 |
Target: 5'- --cGACGAggaggaCGCCgAAGAGCCGGGGg- -3' miRNA: 3'- guaCUGCUa-----GCGG-UUCUCGGUCCCgg -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 126648 | 0.73 | 0.593141 |
Target: 5'- cCcgGACG--CGCCGAGAGaCCGacGGGCCg -3' miRNA: 3'- -GuaCUGCuaGCGGUUCUC-GGU--CCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 90945 | 0.73 | 0.61323 |
Target: 5'- --gGGCGGgcugugCGCCGAG-GCCcGGGCCc -3' miRNA: 3'- guaCUGCUa-----GCGGUUCuCGGuCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 116137 | 0.72 | 0.683583 |
Target: 5'- --cGGCGG-CGgCGGcGGCCAGGGCCu -3' miRNA: 3'- guaCUGCUaGCgGUUcUCGGUCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 42462 | 0.72 | 0.663566 |
Target: 5'- cCAUGGCG-UCGuCCAuGucgcgcgcGCCGGGGCCg -3' miRNA: 3'- -GUACUGCuAGC-GGUuCu-------CGGUCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 31007 | 0.72 | 0.663566 |
Target: 5'- gCcgGACG-UCGCCGccgccuccuccGAGCaCAGGGCCg -3' miRNA: 3'- -GuaCUGCuAGCGGUu----------CUCG-GUCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 26108 | 0.71 | 0.693534 |
Target: 5'- --cGGCGAUCGCCGuGGGCCu--GCCu -3' miRNA: 3'- guaCUGCUAGCGGUuCUCGGuccCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 123439 | 0.71 | 0.723055 |
Target: 5'- gGUGACcGUCGCCGAGcGGCU--GGCCg -3' miRNA: 3'- gUACUGcUAGCGGUUC-UCGGucCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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