miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11123 3' -56 NC_002794.1 + 88061 0.71 0.703435
Target:  5'- ---cGCGcgCGCgAGGGGgCGGGGCCg -3'
miRNA:   3'- guacUGCuaGCGgUUCUCgGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 62572 0.71 0.723055
Target:  5'- --cGACGAacccagCGCCGccgccgccGAcGCCAGGGCCa -3'
miRNA:   3'- guaCUGCUa-----GCGGUu-------CU-CGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 123439 0.71 0.723055
Target:  5'- gGUGACcGUCGCCGAGcGGCU--GGCCg -3'
miRNA:   3'- gUACUGcUAGCGGUUC-UCGGucCCGG- -5'
11123 3' -56 NC_002794.1 + 877 0.71 0.723055
Target:  5'- --aGGCGGUCGgCGugcgcgcGGGCCGGGuGCCa -3'
miRNA:   3'- guaCUGCUAGCgGUu------CUCGGUCC-CGG- -5'
11123 3' -56 NC_002794.1 + 189557 0.7 0.750945
Target:  5'- aCAUGGCGGUC-CCGcucggucGGccGGCCcGGGCCg -3'
miRNA:   3'- -GUACUGCUAGcGGU-------UC--UCGGuCCCGG- -5'
11123 3' -56 NC_002794.1 + 38433 0.7 0.751893
Target:  5'- cCAUGGCGGcggGCCGgacugaGGAGCCGGcgcGGCCg -3'
miRNA:   3'- -GUACUGCUag-CGGU------UCUCGGUC---CCGG- -5'
11123 3' -56 NC_002794.1 + 8063 0.7 0.758498
Target:  5'- -uUGGCGGggCGCCAAGAcgguguuccccaugGCCAGGcCCa -3'
miRNA:   3'- guACUGCUa-GCGGUUCU--------------CGGUCCcGG- -5'
11123 3' -56 NC_002794.1 + 115706 0.7 0.760376
Target:  5'- --cGuCGGUCGCguaCAGGAGCCacugggcggucggGGGGCCc -3'
miRNA:   3'- guaCuGCUAGCG---GUUCUCGG-------------UCCCGG- -5'
11123 3' -56 NC_002794.1 + 12795 0.7 0.761313
Target:  5'- aCGUGACGAUCgGCCcGGGGCCcGuGCUc -3'
miRNA:   3'- -GUACUGCUAG-CGGuUCUCGGuCcCGG- -5'
11123 3' -56 NC_002794.1 + 149078 0.7 0.770623
Target:  5'- --gGugGucaagcUCGCCGAGAGuuuCCGGGGCUu -3'
miRNA:   3'- guaCugCu-----AGCGGUUCUC---GGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 140191 0.7 0.779812
Target:  5'- --cGACGGcgUCGUCGAGGGgCGacccGGGCCg -3'
miRNA:   3'- guaCUGCU--AGCGGUUCUCgGU----CCCGG- -5'
11123 3' -56 NC_002794.1 + 111855 0.7 0.779812
Target:  5'- ---aGCcGUCGCCAcc-GCCAGGGCCu -3'
miRNA:   3'- guacUGcUAGCGGUucuCGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 41977 0.7 0.779812
Target:  5'- --cGGCuccaCGCCGAGGGUCAGGGUg -3'
miRNA:   3'- guaCUGcua-GCGGUUCUCGGUCCCGg -5'
11123 3' -56 NC_002794.1 + 145573 0.7 0.788873
Target:  5'- --gGACGAgCGCCGacGGAGCgGcGGCCg -3'
miRNA:   3'- guaCUGCUaGCGGU--UCUCGgUcCCGG- -5'
11123 3' -56 NC_002794.1 + 124396 0.7 0.788873
Target:  5'- --cGGCGcGUCGCCGGucGUCGGGGCg -3'
miRNA:   3'- guaCUGC-UAGCGGUUcuCGGUCCCGg -5'
11123 3' -56 NC_002794.1 + 22717 0.69 0.806577
Target:  5'- ---cGCGG-CGCCGAGAGCCGGcgaacGGUCg -3'
miRNA:   3'- guacUGCUaGCGGUUCUCGGUC-----CCGG- -5'
11123 3' -56 NC_002794.1 + 110447 0.69 0.806577
Target:  5'- gGUGGCGGagGCCGGcGAGCCGGcucgucGGCUc -3'
miRNA:   3'- gUACUGCUagCGGUU-CUCGGUC------CCGG- -5'
11123 3' -56 NC_002794.1 + 141432 0.69 0.815203
Target:  5'- --cGGCGGgggCGCCGGGGgcGCCGGGaGCg -3'
miRNA:   3'- guaCUGCUa--GCGGUUCU--CGGUCC-CGg -5'
11123 3' -56 NC_002794.1 + 107161 0.69 0.815203
Target:  5'- --cGGCGAgggcCGCCGcuacgcggcGGAGCCGGcGCCg -3'
miRNA:   3'- guaCUGCUa---GCGGU---------UCUCGGUCcCGG- -5'
11123 3' -56 NC_002794.1 + 116092 0.69 0.815203
Target:  5'- --cGGCGGUCGUC----GCCGGGGUCg -3'
miRNA:   3'- guaCUGCUAGCGGuucuCGGUCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.