miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11123 3' -56 NC_002794.1 + 106339 0.66 0.926991
Target:  5'- --cGACGGuUCGCCGGGucgacggcGGgCGGGcGCCg -3'
miRNA:   3'- guaCUGCU-AGCGGUUC--------UCgGUCC-CGG- -5'
11123 3' -56 NC_002794.1 + 113182 0.66 0.921641
Target:  5'- --cGGCGGUCGCgGAGGcGCCuccGCCg -3'
miRNA:   3'- guaCUGCUAGCGgUUCU-CGGuccCGG- -5'
11123 3' -56 NC_002794.1 + 67163 0.66 0.921641
Target:  5'- cCGUGcUGuUgGCCAAGAGCCcgaucGGGUCg -3'
miRNA:   3'- -GUACuGCuAgCGGUUCUCGGu----CCCGG- -5'
11123 3' -56 NC_002794.1 + 10480 0.66 0.921641
Target:  5'- -cUGGCGA-CGCCgAAGcgcagucuGGCCGGGGgCu -3'
miRNA:   3'- guACUGCUaGCGG-UUC--------UCGGUCCCgG- -5'
11123 3' -56 NC_002794.1 + 100817 0.66 0.921641
Target:  5'- aCGUGcCGggCGgCGGGGGCCGGcaGCCg -3'
miRNA:   3'- -GUACuGCuaGCgGUUCUCGGUCc-CGG- -5'
11123 3' -56 NC_002794.1 + 92234 0.67 0.91606
Target:  5'- --cGGCGA-CGCCAAgGAGCCcucGGcGGCg -3'
miRNA:   3'- guaCUGCUaGCGGUU-CUCGG---UC-CCGg -5'
11123 3' -56 NC_002794.1 + 101715 0.67 0.91606
Target:  5'- --gGACGuguUCGUgGugcacguGGGCCAGGGCg -3'
miRNA:   3'- guaCUGCu--AGCGgUu------CUCGGUCCCGg -5'
11123 3' -56 NC_002794.1 + 83930 0.67 0.914916
Target:  5'- --aGACGAgaccgcuuagacCGCCuGGAccGCCuGGGCCg -3'
miRNA:   3'- guaCUGCUa-----------GCGGuUCU--CGGuCCCGG- -5'
11123 3' -56 NC_002794.1 + 113539 0.67 0.910249
Target:  5'- --cGGCG-UCGCCGgcccGGAGC-AGGcGCCg -3'
miRNA:   3'- guaCUGCuAGCGGU----UCUCGgUCC-CGG- -5'
11123 3' -56 NC_002794.1 + 128746 0.67 0.910249
Target:  5'- aUAUaACGccCGUCGAGAGCgguccgguCAGGGCCg -3'
miRNA:   3'- -GUAcUGCuaGCGGUUCUCG--------GUCCCGG- -5'
11123 3' -56 NC_002794.1 + 155485 0.67 0.904208
Target:  5'- --cGACGA-CGaCCGgagaagAGAGCCGaaaccGGGCCg -3'
miRNA:   3'- guaCUGCUaGC-GGU------UCUCGGU-----CCCGG- -5'
11123 3' -56 NC_002794.1 + 68338 0.67 0.904208
Target:  5'- gGUGAcCGGguucaucCGCCAAGAGac-GGGCCu -3'
miRNA:   3'- gUACU-GCUa------GCGGUUCUCgguCCCGG- -5'
11123 3' -56 NC_002794.1 + 126596 0.67 0.904208
Target:  5'- --gGACuGAgCGCCGAG-GCCGGcGCCg -3'
miRNA:   3'- guaCUG-CUaGCGGUUCuCGGUCcCGG- -5'
11123 3' -56 NC_002794.1 + 154385 0.67 0.891449
Target:  5'- --cGGCGGgcacgcccguUCGCguGGuGCCGGuGGCCa -3'
miRNA:   3'- guaCUGCU----------AGCGguUCuCGGUC-CCGG- -5'
11123 3' -56 NC_002794.1 + 147135 0.67 0.890788
Target:  5'- --cGGCGGUUcgagacgGCCccGGGGCCgcgAGGGCCa -3'
miRNA:   3'- guaCUGCUAG-------CGGu-UCUCGG---UCCCGG- -5'
11123 3' -56 NC_002794.1 + 191492 0.67 0.890788
Target:  5'- --gGGCGAUCGuccgccaCCGAGAgguGCCAGcGCCg -3'
miRNA:   3'- guaCUGCUAGC-------GGUUCU---CGGUCcCGG- -5'
11123 3' -56 NC_002794.1 + 20398 0.68 0.884737
Target:  5'- --cGGCGGga-CCGGGAG-CGGGGCCa -3'
miRNA:   3'- guaCUGCUagcGGUUCUCgGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 179938 0.68 0.884737
Target:  5'- --aGACGA-CGUCGcGGGCCGGGGa- -3'
miRNA:   3'- guaCUGCUaGCGGUuCUCGGUCCCgg -5'
11123 3' -56 NC_002794.1 + 126365 0.68 0.884737
Target:  5'- --cGAUu-UCGCCGcugcguGGGcGCCGGGGCCu -3'
miRNA:   3'- guaCUGcuAGCGGU------UCU-CGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 115321 0.68 0.877808
Target:  5'- --cGcACGGUCGCCGcGGcGUCcGGGCCg -3'
miRNA:   3'- guaC-UGCUAGCGGUuCU-CGGuCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.