miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11123 3' -56 NC_002794.1 + 115321 0.68 0.877808
Target:  5'- --cGcACGGUCGCCGcGGcGUCcGGGCCg -3'
miRNA:   3'- guaC-UGCUAGCGGUuCU-CGGuCCCGG- -5'
11123 3' -56 NC_002794.1 + 151587 0.68 0.877808
Target:  5'- --cGGCGcgCGCCGcc-GCCGcGGGCCc -3'
miRNA:   3'- guaCUGCuaGCGGUucuCGGU-CCCGG- -5'
11123 3' -56 NC_002794.1 + 149643 0.68 0.877104
Target:  5'- gCGUGgauGCGGuUCGCCGAggaggccGAGCgGGGGCg -3'
miRNA:   3'- -GUAC---UGCU-AGCGGUU-------CUCGgUCCCGg -5'
11123 3' -56 NC_002794.1 + 40107 0.68 0.875688
Target:  5'- -uUGACGAcgggggcgcgcgagaGCgGAGAGCCAcGGGCUc -3'
miRNA:   3'- guACUGCUag-------------CGgUUCUCGGU-CCCGG- -5'
11123 3' -56 NC_002794.1 + 71089 0.68 0.870667
Target:  5'- --aGACGAacaGCCGGucGCCGGcGGCCu -3'
miRNA:   3'- guaCUGCUag-CGGUUcuCGGUC-CCGG- -5'
11123 3' -56 NC_002794.1 + 13349 0.68 0.870667
Target:  5'- gGUGGCGG-CGCCccucGCCcGGGCCc -3'
miRNA:   3'- gUACUGCUaGCGGuucuCGGuCCCGG- -5'
11123 3' -56 NC_002794.1 + 40497 0.68 0.863318
Target:  5'- --cGGCGcUCGCCGcucGAGUCAcGGCCg -3'
miRNA:   3'- guaCUGCuAGCGGUu--CUCGGUcCCGG- -5'
11123 3' -56 NC_002794.1 + 44211 0.68 0.861824
Target:  5'- --cGACGuccggcucgggCGCCGAGGGCUcGGuGCCg -3'
miRNA:   3'- guaCUGCua---------GCGGUUCUCGGuCC-CGG- -5'
11123 3' -56 NC_002794.1 + 121418 0.68 0.855768
Target:  5'- --cGACcGUCGCCGGGA-CCGcGGCCa -3'
miRNA:   3'- guaCUGcUAGCGGUUCUcGGUcCCGG- -5'
11123 3' -56 NC_002794.1 + 98460 0.68 0.855768
Target:  5'- --aGACGAgCGUCGacgggacggaAGAG-CAGGGCCa -3'
miRNA:   3'- guaCUGCUaGCGGU----------UCUCgGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 143020 0.68 0.848021
Target:  5'- gCGUG-CGGUCgGCCGGGucgacGUgCAGGGCCg -3'
miRNA:   3'- -GUACuGCUAG-CGGUUCu----CG-GUCCCGG- -5'
11123 3' -56 NC_002794.1 + 121478 0.68 0.848021
Target:  5'- --aGACGAcCGCCGguucGGAcgcggccuccGCCGGGGCg -3'
miRNA:   3'- guaCUGCUaGCGGU----UCU----------CGGUCCCGg -5'
11123 3' -56 NC_002794.1 + 25158 0.68 0.848021
Target:  5'- gCGUGAUaggcaGCCAGGcAGCCAGGcaGCCa -3'
miRNA:   3'- -GUACUGcuag-CGGUUC-UCGGUCC--CGG- -5'
11123 3' -56 NC_002794.1 + 53507 0.69 0.840084
Target:  5'- --cGugGGUCGCCcaguagaugGAGaAGCCGuGGGCg -3'
miRNA:   3'- guaCugCUAGCGG---------UUC-UCGGU-CCCGg -5'
11123 3' -56 NC_002794.1 + 126240 0.69 0.831964
Target:  5'- cCGUGGCGAUCGUggcgcgCGAG-GUCGGcGGCUg -3'
miRNA:   3'- -GUACUGCUAGCG------GUUCuCGGUC-CCGG- -5'
11123 3' -56 NC_002794.1 + 79300 0.69 0.818609
Target:  5'- gCGUGGcCGAgCGCCucGAucucacggccuaccuGAGUCAGGGCCg -3'
miRNA:   3'- -GUACU-GCUaGCGG--UU---------------CUCGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 116092 0.69 0.815203
Target:  5'- --cGGCGGUCGUC----GCCGGGGUCg -3'
miRNA:   3'- guaCUGCUAGCGGuucuCGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 141432 0.69 0.815203
Target:  5'- --cGGCGGgggCGCCGGGGgcGCCGGGaGCg -3'
miRNA:   3'- guaCUGCUa--GCGGUUCU--CGGUCC-CGg -5'
11123 3' -56 NC_002794.1 + 107161 0.69 0.815203
Target:  5'- --cGGCGAgggcCGCCGcuacgcggcGGAGCCGGcGCCg -3'
miRNA:   3'- guaCUGCUa---GCGGU---------UCUCGGUCcCGG- -5'
11123 3' -56 NC_002794.1 + 110447 0.69 0.806577
Target:  5'- gGUGGCGGagGCCGGcGAGCCGGcucgucGGCUc -3'
miRNA:   3'- gUACUGCUagCGGUU-CUCGGUC------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.