miRNA display CGI


Results 81 - 96 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11123 3' -56 NC_002794.1 + 31007 0.72 0.663566
Target:  5'- gCcgGACG-UCGCCGccgccuccuccGAGCaCAGGGCCg -3'
miRNA:   3'- -GuaCUGCuAGCGGUu----------CUCG-GUCCCGG- -5'
11123 3' -56 NC_002794.1 + 90945 0.73 0.61323
Target:  5'- --gGGCGGgcugugCGCCGAG-GCCcGGGCCc -3'
miRNA:   3'- guaCUGCUa-----GCGGUUCuCGGuCCCGG- -5'
11123 3' -56 NC_002794.1 + 126648 0.73 0.593141
Target:  5'- cCcgGACG--CGCCGAGAGaCCGacGGGCCg -3'
miRNA:   3'- -GuaCUGCuaGCGGUUCUC-GGU--CCCGG- -5'
11123 3' -56 NC_002794.1 + 55250 0.73 0.593141
Target:  5'- --cGACGAggaggaCGCCgAAGAGCCGGGGg- -3'
miRNA:   3'- guaCUGCUa-----GCGG-UUCUCGGUCCCgg -5'
11123 3' -56 NC_002794.1 + 70462 0.73 0.592138
Target:  5'- aAUGACGA-CGCC-AGAGCCagcacccgaugucGGGGCa -3'
miRNA:   3'- gUACUGCUaGCGGuUCUCGG-------------UCCCGg -5'
11123 3' -56 NC_002794.1 + 57985 0.74 0.563228
Target:  5'- --cGGCGAgccgacgCGCCAGGccuucgucgccGCCGGGGCCg -3'
miRNA:   3'- guaCUGCUa------GCGGUUCu----------CGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 76942 0.74 0.563228
Target:  5'- cCAUGACGAcCGCgGAGAcGCCGuccGGCCg -3'
miRNA:   3'- -GUACUGCUaGCGgUUCU-CGGUc--CCGG- -5'
11123 3' -56 NC_002794.1 + 23886 0.74 0.553343
Target:  5'- ---cGCGAaCGCCGAGGGcCCGGGaGCCg -3'
miRNA:   3'- guacUGCUaGCGGUUCUC-GGUCC-CGG- -5'
11123 3' -56 NC_002794.1 + 187493 0.74 0.553343
Target:  5'- --gGACGAggcCGCgCAGGcGGCCAGGGCg -3'
miRNA:   3'- guaCUGCUa--GCG-GUUC-UCGGUCCCGg -5'
11123 3' -56 NC_002794.1 + 149511 0.75 0.524022
Target:  5'- gGUGACGGggucgUCGCCGGGAGCggaccUGGGGCg -3'
miRNA:   3'- gUACUGCU-----AGCGGUUCUCG-----GUCCCGg -5'
11123 3' -56 NC_002794.1 + 128248 0.76 0.467341
Target:  5'- --aGACGGUCGUCuGGucgcGGUCGGGGCCg -3'
miRNA:   3'- guaCUGCUAGCGGuUC----UCGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 147185 0.76 0.449152
Target:  5'- aCGUGuGCGAgugguugaacucUUGCCGucGGGCCGGGGCCg -3'
miRNA:   3'- -GUAC-UGCU------------AGCGGUu-CUCGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 2265 0.77 0.380571
Target:  5'- --aGGCGAcCGCCGgcccuuauacgGGAGCCGGGGCg -3'
miRNA:   3'- guaCUGCUaGCGGU-----------UCUCGGUCCCGg -5'
11123 3' -56 NC_002794.1 + 14595 0.78 0.364552
Target:  5'- cCGUGGCGAgcgCGCCGggcaccgcgacGGGGCCggagacGGGGCCg -3'
miRNA:   3'- -GUACUGCUa--GCGGU-----------UCUCGG------UCCCGG- -5'
11123 3' -56 NC_002794.1 + 32583 0.8 0.278487
Target:  5'- --cGGCGGU-GCCGGG-GCCGGGGCCg -3'
miRNA:   3'- guaCUGCUAgCGGUUCuCGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 145842 0.8 0.278487
Target:  5'- --cGACGGUCGCCAcgcucgacGAGCCgccgAGGGCCg -3'
miRNA:   3'- guaCUGCUAGCGGUu-------CUCGG----UCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.