miRNA display CGI


Results 21 - 40 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11123 3' -56 NC_002794.1 + 38433 0.7 0.751893
Target:  5'- cCAUGGCGGcggGCCGgacugaGGAGCCGGcgcGGCCg -3'
miRNA:   3'- -GUACUGCUag-CGGU------UCUCGGUC---CCGG- -5'
11123 3' -56 NC_002794.1 + 40107 0.68 0.875688
Target:  5'- -uUGACGAcgggggcgcgcgagaGCgGAGAGCCAcGGGCUc -3'
miRNA:   3'- guACUGCUag-------------CGgUUCUCGGU-CCCGG- -5'
11123 3' -56 NC_002794.1 + 40497 0.68 0.863318
Target:  5'- --cGGCGcUCGCCGcucGAGUCAcGGCCg -3'
miRNA:   3'- guaCUGCuAGCGGUu--CUCGGUcCCGG- -5'
11123 3' -56 NC_002794.1 + 41977 0.7 0.779812
Target:  5'- --cGGCuccaCGCCGAGGGUCAGGGUg -3'
miRNA:   3'- guaCUGcua-GCGGUUCUCGGUCCCGg -5'
11123 3' -56 NC_002794.1 + 42462 0.72 0.663566
Target:  5'- cCAUGGCG-UCGuCCAuGucgcgcgcGCCGGGGCCg -3'
miRNA:   3'- -GUACUGCuAGC-GGUuCu-------CGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 44211 0.68 0.861824
Target:  5'- --cGACGuccggcucgggCGCCGAGGGCUcGGuGCCg -3'
miRNA:   3'- guaCUGCua---------GCGGUUCUCGGuCC-CGG- -5'
11123 3' -56 NC_002794.1 + 49360 0.66 0.946078
Target:  5'- ---uGCGAUCGCCGucgauguggaAGAagcgcGCCAGGccGCCg -3'
miRNA:   3'- guacUGCUAGCGGU----------UCU-----CGGUCC--CGG- -5'
11123 3' -56 NC_002794.1 + 53507 0.69 0.840084
Target:  5'- --cGugGGUCGCCcaguagaugGAGaAGCCGuGGGCg -3'
miRNA:   3'- guaCugCUAGCGG---------UUC-UCGGU-CCCGg -5'
11123 3' -56 NC_002794.1 + 55250 0.73 0.593141
Target:  5'- --cGACGAggaggaCGCCgAAGAGCCGGGGg- -3'
miRNA:   3'- guaCUGCUa-----GCGG-UUCUCGGUCCCgg -5'
11123 3' -56 NC_002794.1 + 56310 0.68 0.877808
Target:  5'- gGUcGCGGUCGCUGGcGGCCGuGGCCg -3'
miRNA:   3'- gUAcUGCUAGCGGUUcUCGGUcCCGG- -5'
11123 3' -56 NC_002794.1 + 57985 0.74 0.563228
Target:  5'- --cGGCGAgccgacgCGCCAGGccuucgucgccGCCGGGGCCg -3'
miRNA:   3'- guaCUGCUa------GCGGUUCu----------CGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 62572 0.71 0.723055
Target:  5'- --cGACGAacccagCGCCGccgccgccGAcGCCAGGGCCa -3'
miRNA:   3'- guaCUGCUa-----GCGGUu-------CU-CGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 67163 0.66 0.921641
Target:  5'- cCGUGcUGuUgGCCAAGAGCCcgaucGGGUCg -3'
miRNA:   3'- -GUACuGCuAgCGGUUCUCGGu----CCCGG- -5'
11123 3' -56 NC_002794.1 + 68338 0.67 0.904208
Target:  5'- gGUGAcCGGguucaucCGCCAAGAGac-GGGCCu -3'
miRNA:   3'- gUACU-GCUa------GCGGUUCUCgguCCCGG- -5'
11123 3' -56 NC_002794.1 + 70331 0.66 0.926991
Target:  5'- ---cGCGAagaCGCCGAcGGCCGGGcGCCc -3'
miRNA:   3'- guacUGCUa--GCGGUUcUCGGUCC-CGG- -5'
11123 3' -56 NC_002794.1 + 70462 0.73 0.592138
Target:  5'- aAUGACGA-CGCC-AGAGCCagcacccgaugucGGGGCa -3'
miRNA:   3'- gUACUGCUaGCGGuUCUCGG-------------UCCCGg -5'
11123 3' -56 NC_002794.1 + 71089 0.68 0.870667
Target:  5'- --aGACGAacaGCCGGucGCCGGcGGCCu -3'
miRNA:   3'- guaCUGCUag-CGGUUcuCGGUC-CCGG- -5'
11123 3' -56 NC_002794.1 + 71966 0.66 0.932109
Target:  5'- --cGGCGcAUCaGCCGgucccggcGGAGCCGGaGCCg -3'
miRNA:   3'- guaCUGC-UAG-CGGU--------UCUCGGUCcCGG- -5'
11123 3' -56 NC_002794.1 + 76942 0.74 0.563228
Target:  5'- cCAUGACGAcCGCgGAGAcGCCGuccGGCCg -3'
miRNA:   3'- -GUACUGCUaGCGgUUCU-CGGUc--CCGG- -5'
11123 3' -56 NC_002794.1 + 79300 0.69 0.818609
Target:  5'- gCGUGGcCGAgCGCCucGAucucacggccuaccuGAGUCAGGGCCg -3'
miRNA:   3'- -GUACU-GCUaGCGG--UU---------------CUCGGUCCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.