miRNA display CGI


Results 41 - 60 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11123 3' -56 NC_002794.1 + 83930 0.67 0.914916
Target:  5'- --aGACGAgaccgcuuagacCGCCuGGAccGCCuGGGCCg -3'
miRNA:   3'- guaCUGCUa-----------GCGGuUCU--CGGuCCCGG- -5'
11123 3' -56 NC_002794.1 + 86826 0.66 0.946078
Target:  5'- ---cGCGAccUCGCCGGGAucggGUCGGcGGCCc -3'
miRNA:   3'- guacUGCU--AGCGGUUCU----CGGUC-CCGG- -5'
11123 3' -56 NC_002794.1 + 88061 0.71 0.703435
Target:  5'- ---cGCGcgCGCgAGGGGgCGGGGCCg -3'
miRNA:   3'- guacUGCuaGCGgUUCUCgGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 90945 0.73 0.61323
Target:  5'- --gGGCGGgcugugCGCCGAG-GCCcGGGCCc -3'
miRNA:   3'- guaCUGCUa-----GCGGUUCuCGGuCCCGG- -5'
11123 3' -56 NC_002794.1 + 91895 0.66 0.946078
Target:  5'- --cGACGAgcaguucaCGCCGcAGcaccuGGCCuGGGCCu -3'
miRNA:   3'- guaCUGCUa-------GCGGU-UC-----UCGGuCCCGG- -5'
11123 3' -56 NC_002794.1 + 92234 0.67 0.91606
Target:  5'- --cGGCGA-CGCCAAgGAGCCcucGGcGGCg -3'
miRNA:   3'- guaCUGCUaGCGGUU-CUCGG---UC-CCGg -5'
11123 3' -56 NC_002794.1 + 94214 0.66 0.941651
Target:  5'- uGUGACGGUgGCggCGAcGGGCgGgcGGGCCg -3'
miRNA:   3'- gUACUGCUAgCG--GUU-CUCGgU--CCCGG- -5'
11123 3' -56 NC_002794.1 + 98460 0.68 0.855768
Target:  5'- --aGACGAgCGUCGacgggacggaAGAG-CAGGGCCa -3'
miRNA:   3'- guaCUGCUaGCGGU----------UCUCgGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 100817 0.66 0.921641
Target:  5'- aCGUGcCGggCGgCGGGGGCCGGcaGCCg -3'
miRNA:   3'- -GUACuGCuaGCgGUUCUCGGUCc-CGG- -5'
11123 3' -56 NC_002794.1 + 101715 0.67 0.91606
Target:  5'- --gGACGuguUCGUgGugcacguGGGCCAGGGCg -3'
miRNA:   3'- guaCUGCu--AGCGgUu------CUCGGUCCCGg -5'
11123 3' -56 NC_002794.1 + 106339 0.66 0.926991
Target:  5'- --cGACGGuUCGCCGGGucgacggcGGgCGGGcGCCg -3'
miRNA:   3'- guaCUGCU-AGCGGUUC--------UCgGUCC-CGG- -5'
11123 3' -56 NC_002794.1 + 107161 0.69 0.815203
Target:  5'- --cGGCGAgggcCGCCGcuacgcggcGGAGCCGGcGCCg -3'
miRNA:   3'- guaCUGCUa---GCGGU---------UCUCGGUCcCGG- -5'
11123 3' -56 NC_002794.1 + 110447 0.69 0.806577
Target:  5'- gGUGGCGGagGCCGGcGAGCCGGcucgucGGCUc -3'
miRNA:   3'- gUACUGCUagCGGUU-CUCGGUC------CCGG- -5'
11123 3' -56 NC_002794.1 + 111855 0.7 0.779812
Target:  5'- ---aGCcGUCGCCAcc-GCCAGGGCCu -3'
miRNA:   3'- guacUGcUAGCGGUucuCGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 113182 0.66 0.921641
Target:  5'- --cGGCGGUCGCgGAGGcGCCuccGCCg -3'
miRNA:   3'- guaCUGCUAGCGgUUCU-CGGuccCGG- -5'
11123 3' -56 NC_002794.1 + 113539 0.67 0.910249
Target:  5'- --cGGCG-UCGCCGgcccGGAGC-AGGcGCCg -3'
miRNA:   3'- guaCUGCuAGCGGU----UCUCGgUCC-CGG- -5'
11123 3' -56 NC_002794.1 + 115321 0.68 0.877808
Target:  5'- --cGcACGGUCGCCGcGGcGUCcGGGCCg -3'
miRNA:   3'- guaC-UGCUAGCGGUuCU-CGGuCCCGG- -5'
11123 3' -56 NC_002794.1 + 115706 0.7 0.760376
Target:  5'- --cGuCGGUCGCguaCAGGAGCCacugggcggucggGGGGCCc -3'
miRNA:   3'- guaCuGCUAGCG---GUUCUCGG-------------UCCCGG- -5'
11123 3' -56 NC_002794.1 + 115862 0.66 0.941651
Target:  5'- --gGACG--CGCgAGGGGuCCGGGGCg -3'
miRNA:   3'- guaCUGCuaGCGgUUCUC-GGUCCCGg -5'
11123 3' -56 NC_002794.1 + 116092 0.69 0.815203
Target:  5'- --cGGCGGUCGUC----GCCGGGGUCg -3'
miRNA:   3'- guaCUGCUAGCGGuucuCGGUCCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.