miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11123 3' -56 NC_002794.1 + 193341 0.66 0.938885
Target:  5'- --aGGCGGUCGUgCGagcaacacagcagccGGuGCCAcGGGCCg -3'
miRNA:   3'- guaCUGCUAGCG-GU---------------UCuCGGU-CCCGG- -5'
11123 3' -56 NC_002794.1 + 191492 0.67 0.890788
Target:  5'- --gGGCGAUCGuccgccaCCGAGAgguGCCAGcGCCg -3'
miRNA:   3'- guaCUGCUAGC-------GGUUCU---CGGUCcCGG- -5'
11123 3' -56 NC_002794.1 + 189557 0.7 0.750945
Target:  5'- aCAUGGCGGUC-CCGcucggucGGccGGCCcGGGCCg -3'
miRNA:   3'- -GUACUGCUAGcGGU-------UC--UCGGuCCCGG- -5'
11123 3' -56 NC_002794.1 + 187493 0.74 0.553343
Target:  5'- --gGACGAggcCGCgCAGGcGGCCAGGGCg -3'
miRNA:   3'- guaCUGCUa--GCG-GUUC-UCGGUCCCGg -5'
11123 3' -56 NC_002794.1 + 179938 0.68 0.884737
Target:  5'- --aGACGA-CGUCGcGGGCCGGGGa- -3'
miRNA:   3'- guaCUGCUaGCGGUuCUCGGUCCCgg -5'
11123 3' -56 NC_002794.1 + 155485 0.67 0.904208
Target:  5'- --cGACGA-CGaCCGgagaagAGAGCCGaaaccGGGCCg -3'
miRNA:   3'- guaCUGCUaGC-GGU------UCUCGGU-----CCCGG- -5'
11123 3' -56 NC_002794.1 + 154385 0.67 0.891449
Target:  5'- --cGGCGGgcacgcccguUCGCguGGuGCCGGuGGCCa -3'
miRNA:   3'- guaCUGCU----------AGCGguUCuCGGUC-CCGG- -5'
11123 3' -56 NC_002794.1 + 151587 0.68 0.877808
Target:  5'- --cGGCGcgCGCCGcc-GCCGcGGGCCc -3'
miRNA:   3'- guaCUGCuaGCGGUucuCGGU-CCCGG- -5'
11123 3' -56 NC_002794.1 + 151200 0.66 0.932109
Target:  5'- aGUGucuGCGcgcCGCCGGcuaccgggucuuGGGCCAGGGCUa -3'
miRNA:   3'- gUAC---UGCua-GCGGUU------------CUCGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 149643 0.68 0.877104
Target:  5'- gCGUGgauGCGGuUCGCCGAggaggccGAGCgGGGGCg -3'
miRNA:   3'- -GUAC---UGCU-AGCGGUU-------CUCGgUCCCGg -5'
11123 3' -56 NC_002794.1 + 149511 0.75 0.524022
Target:  5'- gGUGACGGggucgUCGCCGGGAGCggaccUGGGGCg -3'
miRNA:   3'- gUACUGCU-----AGCGGUUCUCG-----GUCCCGg -5'
11123 3' -56 NC_002794.1 + 149078 0.7 0.770623
Target:  5'- --gGugGucaagcUCGCCGAGAGuuuCCGGGGCUu -3'
miRNA:   3'- guaCugCu-----AGCGGUUCUC---GGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 148119 0.71 0.693534
Target:  5'- --cGACGGUCGgUGucGGGCgCGGGGCCg -3'
miRNA:   3'- guaCUGCUAGCgGUu-CUCG-GUCCCGG- -5'
11123 3' -56 NC_002794.1 + 147185 0.76 0.449152
Target:  5'- aCGUGuGCGAgugguugaacucUUGCCGucGGGCCGGGGCCg -3'
miRNA:   3'- -GUAC-UGCU------------AGCGGUu-CUCGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 147135 0.67 0.890788
Target:  5'- --cGGCGGUUcgagacgGCCccGGGGCCgcgAGGGCCa -3'
miRNA:   3'- guaCUGCUAG-------CGGu-UCUCGG---UCCCGG- -5'
11123 3' -56 NC_002794.1 + 145842 0.8 0.278487
Target:  5'- --cGACGGUCGCCAcgcucgacGAGCCgccgAGGGCCg -3'
miRNA:   3'- guaCUGCUAGCGGUu-------CUCGG----UCCCGG- -5'
11123 3' -56 NC_002794.1 + 145573 0.7 0.788873
Target:  5'- --gGACGAgCGCCGacGGAGCgGcGGCCg -3'
miRNA:   3'- guaCUGCUaGCGGU--UCUCGgUcCCGG- -5'
11123 3' -56 NC_002794.1 + 143020 0.68 0.848021
Target:  5'- gCGUG-CGGUCgGCCGGGucgacGUgCAGGGCCg -3'
miRNA:   3'- -GUACuGCUAG-CGGUUCu----CG-GUCCCGG- -5'
11123 3' -56 NC_002794.1 + 141432 0.69 0.815203
Target:  5'- --cGGCGGgggCGCCGGGGgcGCCGGGaGCg -3'
miRNA:   3'- guaCUGCUa--GCGGUUCU--CGGUCC-CGg -5'
11123 3' -56 NC_002794.1 + 140191 0.7 0.779812
Target:  5'- --cGACGGcgUCGUCGAGGGgCGacccGGGCCg -3'
miRNA:   3'- guaCUGCU--AGCGGUUCUCgGU----CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.