miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11123 3' -56 NC_002794.1 + 137644 0.66 0.946078
Target:  5'- -cUGGCGggCGCC--GGGCCuccGGcGCCg -3'
miRNA:   3'- guACUGCuaGCGGuuCUCGGu--CC-CGG- -5'
11123 3' -56 NC_002794.1 + 137562 0.66 0.946078
Target:  5'- aCGUcGCGccgccGUCGCC----GCCGGGGCCg -3'
miRNA:   3'- -GUAcUGC-----UAGCGGuucuCGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 128746 0.67 0.910249
Target:  5'- aUAUaACGccCGUCGAGAGCgguccgguCAGGGCCg -3'
miRNA:   3'- -GUAcUGCuaGCGGUUCUCG--------GUCCCGG- -5'
11123 3' -56 NC_002794.1 + 128248 0.76 0.467341
Target:  5'- --aGACGGUCGUCuGGucgcGGUCGGGGCCg -3'
miRNA:   3'- guaCUGCUAGCGGuUC----UCGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 126648 0.73 0.593141
Target:  5'- cCcgGACG--CGCCGAGAGaCCGacGGGCCg -3'
miRNA:   3'- -GuaCUGCuaGCGGUUCUC-GGU--CCCGG- -5'
11123 3' -56 NC_002794.1 + 126596 0.67 0.904208
Target:  5'- --gGACuGAgCGCCGAG-GCCGGcGCCg -3'
miRNA:   3'- guaCUG-CUaGCGGUUCuCGGUCcCGG- -5'
11123 3' -56 NC_002794.1 + 126365 0.68 0.884737
Target:  5'- --cGAUu-UCGCCGcugcguGGGcGCCGGGGCCu -3'
miRNA:   3'- guaCUGcuAGCGGU------UCU-CGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 126240 0.69 0.831964
Target:  5'- cCGUGGCGAUCGUggcgcgCGAG-GUCGGcGGCUg -3'
miRNA:   3'- -GUACUGCUAGCG------GUUCuCGGUC-CCGG- -5'
11123 3' -56 NC_002794.1 + 124396 0.7 0.788873
Target:  5'- --cGGCGcGUCGCCGGucGUCGGGGCg -3'
miRNA:   3'- guaCUGC-UAGCGGUUcuCGGUCCCGg -5'
11123 3' -56 NC_002794.1 + 123439 0.71 0.723055
Target:  5'- gGUGACcGUCGCCGAGcGGCU--GGCCg -3'
miRNA:   3'- gUACUGcUAGCGGUUC-UCGGucCCGG- -5'
11123 3' -56 NC_002794.1 + 121972 0.66 0.936995
Target:  5'- cCGUGcggcuCGGUccCGCCGAGcgcGGCCGGGaGCUg -3'
miRNA:   3'- -GUACu----GCUA--GCGGUUC---UCGGUCC-CGG- -5'
11123 3' -56 NC_002794.1 + 121478 0.68 0.848021
Target:  5'- --aGACGAcCGCCGguucGGAcgcggccuccGCCGGGGCg -3'
miRNA:   3'- guaCUGCUaGCGGU----UCU----------CGGUCCCGg -5'
11123 3' -56 NC_002794.1 + 121418 0.68 0.855768
Target:  5'- --cGACcGUCGCCGGGA-CCGcGGCCa -3'
miRNA:   3'- guaCUGcUAGCGGUUCUcGGUcCCGG- -5'
11123 3' -56 NC_002794.1 + 120286 0.66 0.941651
Target:  5'- --gGAgcuCGAgcaCGCCGAGc-CCGGGGCCu -3'
miRNA:   3'- guaCU---GCUa--GCGGUUCucGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 118854 0.66 0.936995
Target:  5'- -cUGACGcgcUCGCagAAGu-CCAGGGCCa -3'
miRNA:   3'- guACUGCu--AGCGg-UUCucGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 116137 0.72 0.683583
Target:  5'- --cGGCGG-CGgCGGcGGCCAGGGCCu -3'
miRNA:   3'- guaCUGCUaGCgGUUcUCGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 116092 0.69 0.815203
Target:  5'- --cGGCGGUCGUC----GCCGGGGUCg -3'
miRNA:   3'- guaCUGCUAGCGGuucuCGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 115862 0.66 0.941651
Target:  5'- --gGACG--CGCgAGGGGuCCGGGGCg -3'
miRNA:   3'- guaCUGCuaGCGgUUCUC-GGUCCCGg -5'
11123 3' -56 NC_002794.1 + 115706 0.7 0.760376
Target:  5'- --cGuCGGUCGCguaCAGGAGCCacugggcggucggGGGGCCc -3'
miRNA:   3'- guaCuGCUAGCG---GUUCUCGG-------------UCCCGG- -5'
11123 3' -56 NC_002794.1 + 115321 0.68 0.877808
Target:  5'- --cGcACGGUCGCCGcGGcGUCcGGGCCg -3'
miRNA:   3'- guaC-UGCUAGCGGUuCU-CGGuCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.