Results 41 - 60 of 96 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11123 | 3' | -56 | NC_002794.1 | + | 113539 | 0.67 | 0.910249 |
Target: 5'- --cGGCG-UCGCCGgcccGGAGC-AGGcGCCg -3' miRNA: 3'- guaCUGCuAGCGGU----UCUCGgUCC-CGG- -5' |
|||||||
11123 | 3' | -56 | NC_002794.1 | + | 113182 | 0.66 | 0.921641 |
Target: 5'- --cGGCGGUCGCgGAGGcGCCuccGCCg -3' miRNA: 3'- guaCUGCUAGCGgUUCU-CGGuccCGG- -5' |
|||||||
11123 | 3' | -56 | NC_002794.1 | + | 111855 | 0.7 | 0.779812 |
Target: 5'- ---aGCcGUCGCCAcc-GCCAGGGCCu -3' miRNA: 3'- guacUGcUAGCGGUucuCGGUCCCGG- -5' |
|||||||
11123 | 3' | -56 | NC_002794.1 | + | 110447 | 0.69 | 0.806577 |
Target: 5'- gGUGGCGGagGCCGGcGAGCCGGcucgucGGCUc -3' miRNA: 3'- gUACUGCUagCGGUU-CUCGGUC------CCGG- -5' |
|||||||
11123 | 3' | -56 | NC_002794.1 | + | 107161 | 0.69 | 0.815203 |
Target: 5'- --cGGCGAgggcCGCCGcuacgcggcGGAGCCGGcGCCg -3' miRNA: 3'- guaCUGCUa---GCGGU---------UCUCGGUCcCGG- -5' |
|||||||
11123 | 3' | -56 | NC_002794.1 | + | 106339 | 0.66 | 0.926991 |
Target: 5'- --cGACGGuUCGCCGGGucgacggcGGgCGGGcGCCg -3' miRNA: 3'- guaCUGCU-AGCGGUUC--------UCgGUCC-CGG- -5' |
|||||||
11123 | 3' | -56 | NC_002794.1 | + | 101715 | 0.67 | 0.91606 |
Target: 5'- --gGACGuguUCGUgGugcacguGGGCCAGGGCg -3' miRNA: 3'- guaCUGCu--AGCGgUu------CUCGGUCCCGg -5' |
|||||||
11123 | 3' | -56 | NC_002794.1 | + | 100817 | 0.66 | 0.921641 |
Target: 5'- aCGUGcCGggCGgCGGGGGCCGGcaGCCg -3' miRNA: 3'- -GUACuGCuaGCgGUUCUCGGUCc-CGG- -5' |
|||||||
11123 | 3' | -56 | NC_002794.1 | + | 98460 | 0.68 | 0.855768 |
Target: 5'- --aGACGAgCGUCGacgggacggaAGAG-CAGGGCCa -3' miRNA: 3'- guaCUGCUaGCGGU----------UCUCgGUCCCGG- -5' |
|||||||
11123 | 3' | -56 | NC_002794.1 | + | 94214 | 0.66 | 0.941651 |
Target: 5'- uGUGACGGUgGCggCGAcGGGCgGgcGGGCCg -3' miRNA: 3'- gUACUGCUAgCG--GUU-CUCGgU--CCCGG- -5' |
|||||||
11123 | 3' | -56 | NC_002794.1 | + | 92234 | 0.67 | 0.91606 |
Target: 5'- --cGGCGA-CGCCAAgGAGCCcucGGcGGCg -3' miRNA: 3'- guaCUGCUaGCGGUU-CUCGG---UC-CCGg -5' |
|||||||
11123 | 3' | -56 | NC_002794.1 | + | 91895 | 0.66 | 0.946078 |
Target: 5'- --cGACGAgcaguucaCGCCGcAGcaccuGGCCuGGGCCu -3' miRNA: 3'- guaCUGCUa-------GCGGU-UC-----UCGGuCCCGG- -5' |
|||||||
11123 | 3' | -56 | NC_002794.1 | + | 90945 | 0.73 | 0.61323 |
Target: 5'- --gGGCGGgcugugCGCCGAG-GCCcGGGCCc -3' miRNA: 3'- guaCUGCUa-----GCGGUUCuCGGuCCCGG- -5' |
|||||||
11123 | 3' | -56 | NC_002794.1 | + | 88061 | 0.71 | 0.703435 |
Target: 5'- ---cGCGcgCGCgAGGGGgCGGGGCCg -3' miRNA: 3'- guacUGCuaGCGgUUCUCgGUCCCGG- -5' |
|||||||
11123 | 3' | -56 | NC_002794.1 | + | 86826 | 0.66 | 0.946078 |
Target: 5'- ---cGCGAccUCGCCGGGAucggGUCGGcGGCCc -3' miRNA: 3'- guacUGCU--AGCGGUUCU----CGGUC-CCGG- -5' |
|||||||
11123 | 3' | -56 | NC_002794.1 | + | 83930 | 0.67 | 0.914916 |
Target: 5'- --aGACGAgaccgcuuagacCGCCuGGAccGCCuGGGCCg -3' miRNA: 3'- guaCUGCUa-----------GCGGuUCU--CGGuCCCGG- -5' |
|||||||
11123 | 3' | -56 | NC_002794.1 | + | 79300 | 0.69 | 0.818609 |
Target: 5'- gCGUGGcCGAgCGCCucGAucucacggccuaccuGAGUCAGGGCCg -3' miRNA: 3'- -GUACU-GCUaGCGG--UU---------------CUCGGUCCCGG- -5' |
|||||||
11123 | 3' | -56 | NC_002794.1 | + | 76942 | 0.74 | 0.563228 |
Target: 5'- cCAUGACGAcCGCgGAGAcGCCGuccGGCCg -3' miRNA: 3'- -GUACUGCUaGCGgUUCU-CGGUc--CCGG- -5' |
|||||||
11123 | 3' | -56 | NC_002794.1 | + | 71966 | 0.66 | 0.932109 |
Target: 5'- --cGGCGcAUCaGCCGgucccggcGGAGCCGGaGCCg -3' miRNA: 3'- guaCUGC-UAG-CGGU--------UCUCGGUCcCGG- -5' |
|||||||
11123 | 3' | -56 | NC_002794.1 | + | 71089 | 0.68 | 0.870667 |
Target: 5'- --aGACGAacaGCCGGucGCCGGcGGCCu -3' miRNA: 3'- guaCUGCUag-CGGUUcuCGGUC-CCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home