Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11123 | 3' | -56 | NC_002794.1 | + | 71966 | 0.66 | 0.932109 |
Target: 5'- --cGGCGcAUCaGCCGgucccggcGGAGCCGGaGCCg -3' miRNA: 3'- guaCUGC-UAG-CGGU--------UCUCGGUCcCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 106339 | 0.66 | 0.926991 |
Target: 5'- --cGACGGuUCGCCGGGucgacggcGGgCGGGcGCCg -3' miRNA: 3'- guaCUGCU-AGCGGUUC--------UCgGUCC-CGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 115862 | 0.66 | 0.941651 |
Target: 5'- --gGACG--CGCgAGGGGuCCGGGGCg -3' miRNA: 3'- guaCUGCuaGCGgUUCUC-GGUCCCGg -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 12184 | 0.66 | 0.941651 |
Target: 5'- --cGACGc-CGCCGc-GGCCGGGcGCCg -3' miRNA: 3'- guaCUGCuaGCGGUucUCGGUCC-CGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 34014 | 0.66 | 0.946078 |
Target: 5'- -cUGACGccguccaucAUCGaCC-AGAGCCGccugcugccGGGCCg -3' miRNA: 3'- guACUGC---------UAGC-GGuUCUCGGU---------CCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 49360 | 0.66 | 0.946078 |
Target: 5'- ---uGCGAUCGCCGucgauguggaAGAagcgcGCCAGGccGCCg -3' miRNA: 3'- guacUGCUAGCGGU----------UCU-----CGGUCC--CGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 86826 | 0.66 | 0.946078 |
Target: 5'- ---cGCGAccUCGCCGGGAucggGUCGGcGGCCc -3' miRNA: 3'- guacUGCU--AGCGGUUCU----CGGUC-CCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 10661 | 0.66 | 0.946078 |
Target: 5'- --cGACGAgCGUCuGGAGCCGccugagcuucguGGGUCu -3' miRNA: 3'- guaCUGCUaGCGGuUCUCGGU------------CCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 137644 | 0.66 | 0.946078 |
Target: 5'- -cUGGCGggCGCC--GGGCCuccGGcGCCg -3' miRNA: 3'- guACUGCuaGCGGuuCUCGGu--CC-CGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 137562 | 0.66 | 0.946078 |
Target: 5'- aCGUcGCGccgccGUCGCC----GCCGGGGCCg -3' miRNA: 3'- -GUAcUGC-----UAGCGGuucuCGGUCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 8642 | 0.66 | 0.941651 |
Target: 5'- --aGACGugcgCGCCA--AGCUGGGGaCCa -3' miRNA: 3'- guaCUGCua--GCGGUucUCGGUCCC-GG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 120286 | 0.66 | 0.941651 |
Target: 5'- --gGAgcuCGAgcaCGCCGAGc-CCGGGGCCu -3' miRNA: 3'- guaCU---GCUa--GCGGUUCucGGUCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 70331 | 0.66 | 0.926991 |
Target: 5'- ---cGCGAagaCGCCGAcGGCCGGGcGCCc -3' miRNA: 3'- guacUGCUa--GCGGUUcUCGGUCC-CGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 37973 | 0.66 | 0.936517 |
Target: 5'- uCGUGGuacgagcCGAUCGCgGucAGCC-GGGCCa -3' miRNA: 3'- -GUACU-------GCUAGCGgUucUCGGuCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 151200 | 0.66 | 0.932109 |
Target: 5'- aGUGucuGCGcgcCGCCGGcuaccgggucuuGGGCCAGGGCUa -3' miRNA: 3'- gUAC---UGCua-GCGGUU------------CUCGGUCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 121972 | 0.66 | 0.936995 |
Target: 5'- cCGUGcggcuCGGUccCGCCGAGcgcGGCCGGGaGCUg -3' miRNA: 3'- -GUACu----GCUA--GCGGUUC---UCGGUCC-CGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 11519 | 0.66 | 0.936995 |
Target: 5'- aCGUGACGAUCGagcugcgggcgaCCGAGGaCCGcGGCUg -3' miRNA: 3'- -GUACUGCUAGC------------GGUUCUcGGUcCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 118854 | 0.66 | 0.936995 |
Target: 5'- -cUGACGcgcUCGCagAAGu-CCAGGGCCa -3' miRNA: 3'- guACUGCu--AGCGg-UUCucGGUCCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 193341 | 0.66 | 0.938885 |
Target: 5'- --aGGCGGUCGUgCGagcaacacagcagccGGuGCCAcGGGCCg -3' miRNA: 3'- guaCUGCUAGCG-GU---------------UCuCGGU-CCCGG- -5' |
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11123 | 3' | -56 | NC_002794.1 | + | 94214 | 0.66 | 0.941651 |
Target: 5'- uGUGACGGUgGCggCGAcGGGCgGgcGGGCCg -3' miRNA: 3'- gUACUGCUAgCG--GUU-CUCGgU--CCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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