miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11123 3' -56 NC_002794.1 + 49360 0.66 0.946078
Target:  5'- ---uGCGAUCGCCGucgauguggaAGAagcgcGCCAGGccGCCg -3'
miRNA:   3'- guacUGCUAGCGGU----------UCU-----CGGUCC--CGG- -5'
11123 3' -56 NC_002794.1 + 86826 0.66 0.946078
Target:  5'- ---cGCGAccUCGCCGGGAucggGUCGGcGGCCc -3'
miRNA:   3'- guacUGCU--AGCGGUUCU----CGGUC-CCGG- -5'
11123 3' -56 NC_002794.1 + 10661 0.66 0.946078
Target:  5'- --cGACGAgCGUCuGGAGCCGccugagcuucguGGGUCu -3'
miRNA:   3'- guaCUGCUaGCGGuUCUCGGU------------CCCGG- -5'
11123 3' -56 NC_002794.1 + 137644 0.66 0.946078
Target:  5'- -cUGGCGggCGCC--GGGCCuccGGcGCCg -3'
miRNA:   3'- guACUGCuaGCGGuuCUCGGu--CC-CGG- -5'
11123 3' -56 NC_002794.1 + 137562 0.66 0.946078
Target:  5'- aCGUcGCGccgccGUCGCC----GCCGGGGCCg -3'
miRNA:   3'- -GUAcUGC-----UAGCGGuucuCGGUCCCGG- -5'
11123 3' -56 NC_002794.1 + 11519 0.66 0.936995
Target:  5'- aCGUGACGAUCGagcugcgggcgaCCGAGGaCCGcGGCUg -3'
miRNA:   3'- -GUACUGCUAGC------------GGUUCUcGGUcCCGG- -5'
11123 3' -56 NC_002794.1 + 121972 0.66 0.936995
Target:  5'- cCGUGcggcuCGGUccCGCCGAGcgcGGCCGGGaGCUg -3'
miRNA:   3'- -GUACu----GCUA--GCGGUUC---UCGGUCC-CGG- -5'
11123 3' -56 NC_002794.1 + 83930 0.67 0.914916
Target:  5'- --aGACGAgaccgcuuagacCGCCuGGAccGCCuGGGCCg -3'
miRNA:   3'- guaCUGCUa-----------GCGGuUCU--CGGuCCCGG- -5'
11123 3' -56 NC_002794.1 + 128746 0.67 0.910249
Target:  5'- aUAUaACGccCGUCGAGAGCgguccgguCAGGGCCg -3'
miRNA:   3'- -GUAcUGCuaGCGGUUCUCG--------GUCCCGG- -5'
11123 3' -56 NC_002794.1 + 92234 0.67 0.91606
Target:  5'- --cGGCGA-CGCCAAgGAGCCcucGGcGGCg -3'
miRNA:   3'- guaCUGCUaGCGGUU-CUCGG---UC-CCGg -5'
11123 3' -56 NC_002794.1 + 100817 0.66 0.921641
Target:  5'- aCGUGcCGggCGgCGGGGGCCGGcaGCCg -3'
miRNA:   3'- -GUACuGCuaGCgGUUCUCGGUCc-CGG- -5'
11123 3' -56 NC_002794.1 + 10480 0.66 0.921641
Target:  5'- -cUGGCGA-CGCCgAAGcgcagucuGGCCGGGGgCu -3'
miRNA:   3'- guACUGCUaGCGG-UUC--------UCGGUCCCgG- -5'
11123 3' -56 NC_002794.1 + 101715 0.67 0.91606
Target:  5'- --gGACGuguUCGUgGugcacguGGGCCAGGGCg -3'
miRNA:   3'- guaCUGCu--AGCGgUu------CUCGGUCCCGg -5'
11123 3' -56 NC_002794.1 + 67163 0.66 0.921641
Target:  5'- cCGUGcUGuUgGCCAAGAGCCcgaucGGGUCg -3'
miRNA:   3'- -GUACuGCuAgCGGUUCUCGGu----CCCGG- -5'
11123 3' -56 NC_002794.1 + 113182 0.66 0.921641
Target:  5'- --cGGCGGUCGCgGAGGcGCCuccGCCg -3'
miRNA:   3'- guaCUGCUAGCGgUUCU-CGGuccCGG- -5'
11123 3' -56 NC_002794.1 + 71966 0.66 0.932109
Target:  5'- --cGGCGcAUCaGCCGgucccggcGGAGCCGGaGCCg -3'
miRNA:   3'- guaCUGC-UAG-CGGU--------UCUCGGUCcCGG- -5'
11123 3' -56 NC_002794.1 + 106339 0.66 0.926991
Target:  5'- --cGACGGuUCGCCGGGucgacggcGGgCGGGcGCCg -3'
miRNA:   3'- guaCUGCU-AGCGGUUC--------UCgGUCC-CGG- -5'
11123 3' -56 NC_002794.1 + 70331 0.66 0.926991
Target:  5'- ---cGCGAagaCGCCGAcGGCCGGGcGCCc -3'
miRNA:   3'- guacUGCUa--GCGGUUcUCGGUCC-CGG- -5'
11123 3' -56 NC_002794.1 + 37973 0.66 0.936517
Target:  5'- uCGUGGuacgagcCGAUCGCgGucAGCC-GGGCCa -3'
miRNA:   3'- -GUACU-------GCUAGCGgUucUCGGuCCCGG- -5'
11123 3' -56 NC_002794.1 + 151200 0.66 0.932109
Target:  5'- aGUGucuGCGcgcCGCCGGcuaccgggucuuGGGCCAGGGCUa -3'
miRNA:   3'- gUAC---UGCua-GCGGUU------------CUCGGUCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.