miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11123 5' -55 NC_002794.1 + 95868 0.65 0.968133
Target:  5'- -gGGCCGUuucaguguggCGACc-CGGCGGCGAg-- -3'
miRNA:   3'- caCCGGUA----------GCUGaaGCCGCCGUUagg -5'
11123 5' -55 NC_002794.1 + 94039 0.65 0.968133
Target:  5'- -gGGCC--CGAgagCGGCGGCGGUgCg -3'
miRNA:   3'- caCCGGuaGCUgaaGCCGCCGUUAgG- -5'
11123 5' -55 NC_002794.1 + 71318 0.66 0.96501
Target:  5'- -cGGCgAgcgCGccACcUCGGCGGCGaugucGUCCg -3'
miRNA:   3'- caCCGgUa--GC--UGaAGCCGCCGU-----UAGG- -5'
11123 5' -55 NC_002794.1 + 14720 0.66 0.96501
Target:  5'- --uGCUcgCGGCUUCGGCucGgGGUCCg -3'
miRNA:   3'- cacCGGuaGCUGAAGCCGc-CgUUAGG- -5'
11123 5' -55 NC_002794.1 + 174944 0.66 0.96501
Target:  5'- cUGGCCuAUCGAUgaaagUUGGCgauGGcCGAUCUa -3'
miRNA:   3'- cACCGG-UAGCUGa----AGCCG---CC-GUUAGG- -5'
11123 5' -55 NC_002794.1 + 37745 0.66 0.96501
Target:  5'- --cGCCggCGGCggcgCGGCGGCg--CCg -3'
miRNA:   3'- cacCGGuaGCUGaa--GCCGCCGuuaGG- -5'
11123 5' -55 NC_002794.1 + 29204 0.66 0.96501
Target:  5'- -cGuCCGUcCGGCggUCGGCGGCcGUCg -3'
miRNA:   3'- caCcGGUA-GCUGa-AGCCGCCGuUAGg -5'
11123 5' -55 NC_002794.1 + 117470 0.66 0.96436
Target:  5'- -cGGUCGUCGGCguacucguggaUGGCGuGCAgGUCCu -3'
miRNA:   3'- caCCGGUAGCUGaa---------GCCGC-CGU-UAGG- -5'
11123 5' -55 NC_002794.1 + 110623 0.66 0.961678
Target:  5'- -gGaGCCG-CGGCgccgCGGCGGCGGggucggguuucUCCg -3'
miRNA:   3'- caC-CGGUaGCUGaa--GCCGCCGUU-----------AGG- -5'
11123 5' -55 NC_002794.1 + 18747 0.66 0.961678
Target:  5'- --cGCCA-CGACggcCGGCGGCAAcgacUCUc -3'
miRNA:   3'- cacCGGUaGCUGaa-GCCGCCGUU----AGG- -5'
11123 5' -55 NC_002794.1 + 182195 0.66 0.961678
Target:  5'- -gGGCC-UCGGCgcCGGCGuCGcgCCa -3'
miRNA:   3'- caCCGGuAGCUGaaGCCGCcGUuaGG- -5'
11123 5' -55 NC_002794.1 + 41362 0.66 0.961678
Target:  5'- --cGCCGUCGGcCUUCGcgcucGCGGCGccUCCu -3'
miRNA:   3'- cacCGGUAGCU-GAAGC-----CGCCGUu-AGG- -5'
11123 5' -55 NC_002794.1 + 141651 0.66 0.961678
Target:  5'- cGUGGCCG-CGGCcgcCGGCGG--GUCg -3'
miRNA:   3'- -CACCGGUaGCUGaa-GCCGCCguUAGg -5'
11123 5' -55 NC_002794.1 + 61825 0.66 0.961678
Target:  5'- -cGGCCGcCGGCggcCGGCGuCAcUCCg -3'
miRNA:   3'- caCCGGUaGCUGaa-GCCGCcGUuAGG- -5'
11123 5' -55 NC_002794.1 + 47412 0.66 0.961678
Target:  5'- --cGCCGUCGGCgccgUCGcGCGGagcgCCa -3'
miRNA:   3'- cacCGGUAGCUGa---AGC-CGCCguuaGG- -5'
11123 5' -55 NC_002794.1 + 53906 0.66 0.961678
Target:  5'- -cGGCguccuCGUCGcCgUCGGCGGCGccgCCg -3'
miRNA:   3'- caCCG-----GUAGCuGaAGCCGCCGUua-GG- -5'
11123 5' -55 NC_002794.1 + 75374 0.66 0.958131
Target:  5'- --cGCCG-CGGCcggCGGCGGCGG-CCu -3'
miRNA:   3'- cacCGGUaGCUGaa-GCCGCCGUUaGG- -5'
11123 5' -55 NC_002794.1 + 180899 0.66 0.958131
Target:  5'- -cGGCCGcgGAC-UCGGCcGCGGUCUc -3'
miRNA:   3'- caCCGGUagCUGaAGCCGcCGUUAGG- -5'
11123 5' -55 NC_002794.1 + 127085 0.66 0.958131
Target:  5'- --cGCCGgacCGGCUggagagCGGCGGCucgCCg -3'
miRNA:   3'- cacCGGUa--GCUGAa-----GCCGCCGuuaGG- -5'
11123 5' -55 NC_002794.1 + 142145 0.66 0.958131
Target:  5'- -gGGUCA-CGGCggaGGCGGCGGUagcaCCg -3'
miRNA:   3'- caCCGGUaGCUGaagCCGCCGUUA----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.