miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11125 3' -62.1 NC_002794.1 + 141155 0.66 0.767648
Target:  5'- cGGCGGAUCCCg-CGa--CGACGUCGu -3'
miRNA:   3'- -CCGUCUGGGGagGCgggGCUGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 68957 0.66 0.767648
Target:  5'- cGGCGccucuccCUCCUCCGCgggccgcgaCgCCGGCGUCGAc -3'
miRNA:   3'- -CCGUcu-----GGGGAGGCG---------G-GGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 137499 0.66 0.767648
Target:  5'- cGGUcGGuuCCUCCGCCggcguuUCGACGUgGAu -3'
miRNA:   3'- -CCGuCUggGGAGGCGG------GGCUGCAgCU- -5'
11125 3' -62.1 NC_002794.1 + 190735 0.66 0.767648
Target:  5'- cGCAGcGCCCgCcgCCGUCUCGACGggggCGGc -3'
miRNA:   3'- cCGUC-UGGG-Ga-GGCGGGGCUGCa---GCU- -5'
11125 3' -62.1 NC_002794.1 + 128000 0.66 0.767648
Target:  5'- gGGCGGACgaCCgucgucggCCGCCCCGuCGgcuGAc -3'
miRNA:   3'- -CCGUCUGg-GGa-------GGCGGGGCuGCag-CU- -5'
11125 3' -62.1 NC_002794.1 + 136714 0.66 0.767648
Target:  5'- uGCAGGCgCCg--GUCCCGGCGUCc- -3'
miRNA:   3'- cCGUCUGgGGaggCGGGGCUGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 113559 0.66 0.758813
Target:  5'- aGGCgccGGACCgUCUgCGUCUCGGCGUCc- -3'
miRNA:   3'- -CCG---UCUGG-GGAgGCGGGGCUGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 63477 0.66 0.758813
Target:  5'- aGGCGGcgGCCgCCgucgacgaCGCCgCGGCGUCGu -3'
miRNA:   3'- -CCGUC--UGG-GGag------GCGGgGCUGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 49861 0.66 0.758813
Target:  5'- cGGCGGcGCCCg-CCaCCCgGACGUgGAg -3'
miRNA:   3'- -CCGUC-UGGGgaGGcGGGgCUGCAgCU- -5'
11125 3' -62.1 NC_002794.1 + 116896 0.66 0.758813
Target:  5'- cGGCGccGuCUCCggcggCCGgUCCGGCGUCGGc -3'
miRNA:   3'- -CCGU--CuGGGGa----GGCgGGGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 183931 0.66 0.758813
Target:  5'- cGGCAGGgUCa-CCGCCaCGAaCGUCGAc -3'
miRNA:   3'- -CCGUCUgGGgaGGCGGgGCU-GCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 118250 0.66 0.758813
Target:  5'- cGGCGGGCUggaggucggCCggggcggCgGCgCCGGCGUCGGg -3'
miRNA:   3'- -CCGUCUGG---------GGa------GgCGgGGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 185487 0.66 0.756143
Target:  5'- cGGCgaggGGACCgccuauauauucgaUCUCCGCgUCGGCGUCa- -3'
miRNA:   3'- -CCG----UCUGG--------------GGAGGCGgGGCUGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 65743 0.66 0.749881
Target:  5'- cGGCcuccgacGGCCCCgcgCCGCcgccgCCCGugGUgGGg -3'
miRNA:   3'- -CCGu------CUGGGGa--GGCG-----GGGCugCAgCU- -5'
11125 3' -62.1 NC_002794.1 + 35457 0.66 0.749881
Target:  5'- cGGCuGAUCgCCagCUGCCUcuaccuguucuuCGACGUCGAg -3'
miRNA:   3'- -CCGuCUGG-GGa-GGCGGG------------GCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 82091 0.66 0.749881
Target:  5'- gGGCAccccGACCUCgucugCCGCCCCcgcagccuccucGGCGUgGGc -3'
miRNA:   3'- -CCGU----CUGGGGa----GGCGGGG------------CUGCAgCU- -5'
11125 3' -62.1 NC_002794.1 + 53096 0.66 0.749881
Target:  5'- gGGCcaacaGGACCCCggCgGUUCCGgagcucGCGUCGAc -3'
miRNA:   3'- -CCG-----UCUGGGGa-GgCGGGGC------UGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 152185 0.66 0.748983
Target:  5'- uGCAGcuACCUgaacacggucgcgUUCCGCCCggaGGCGUCGGa -3'
miRNA:   3'- cCGUC--UGGG-------------GAGGCGGGg--CUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 53880 0.66 0.74086
Target:  5'- cGGCGGACUCCUCgucggGaCUCCGGCGgCGu -3'
miRNA:   3'- -CCGUCUGGGGAGg----C-GGGGCUGCaGCu -5'
11125 3' -62.1 NC_002794.1 + 62509 0.66 0.74086
Target:  5'- cGGCGccgccGGCgCCUCCGCCCaccguGACGaaGAg -3'
miRNA:   3'- -CCGU-----CUGgGGAGGCGGGg----CUGCagCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.