Results 41 - 60 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11125 | 3' | -62.1 | NC_002794.1 | + | 138546 | 0.67 | 0.685262 |
Target: 5'- cGGCGGcuuuuCgCCUCCGCCcgcuCCGuCGUCGc -3' miRNA: 3'- -CCGUCu----GgGGAGGCGG----GGCuGCAGCu -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 37630 | 0.67 | 0.684319 |
Target: 5'- cGCGGACCCCguagCCGCUCUgcagcuuguaguuGGCGUgCGu -3' miRNA: 3'- cCGUCUGGGGa---GGCGGGG-------------CUGCA-GCu -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 130644 | 0.67 | 0.67582 |
Target: 5'- cGGCccGCCCg-CCGCCCCGcCGcCGGc -3' miRNA: 3'- -CCGucUGGGgaGGCGGGGCuGCaGCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 191702 | 0.67 | 0.682433 |
Target: 5'- cGCGGACCaCCUCCucgucguccgagcgGCCCacgGACG-CGAc -3' miRNA: 3'- cCGUCUGG-GGAGG--------------CGGGg--CUGCaGCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 90479 | 0.67 | 0.67582 |
Target: 5'- cGGCGGGgCCg-CCGUCCCGcGCGaUCGGc -3' miRNA: 3'- -CCGUCUgGGgaGGCGGGGC-UGC-AGCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 181487 | 0.67 | 0.67582 |
Target: 5'- aGGCAGACgagCC-CCGCgagCCCGACGcUCGu -3' miRNA: 3'- -CCGUCUGg--GGaGGCG---GGGCUGC-AGCu -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 46131 | 0.67 | 0.666347 |
Target: 5'- cGGCuc-CCCCgUCCGagUCGGCGUCGAu -3' miRNA: 3'- -CCGucuGGGG-AGGCggGGCUGCAGCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 11862 | 0.67 | 0.666347 |
Target: 5'- cGGCGacGACCgC-CCGCCCCG-CGaCGGg -3' miRNA: 3'- -CCGU--CUGGgGaGGCGGGGCuGCaGCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 108802 | 0.67 | 0.690909 |
Target: 5'- cGGCGGAUCUacgaggugcaaCGCUUCGGCGUCGGc -3' miRNA: 3'- -CCGUCUGGGgag--------GCGGGGCUGCAGCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 17336 | 0.67 | 0.685262 |
Target: 5'- cGGCGu-CCCCUCCGaCCCaCGcCGUgcCGAg -3' miRNA: 3'- -CCGUcuGGGGAGGC-GGG-GCuGCA--GCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 192385 | 0.67 | 0.704025 |
Target: 5'- gGGCuGACCgCCaccgCCGCgCCGGgguaGUCGAa -3' miRNA: 3'- -CCGuCUGG-GGa---GGCGgGGCUg---CAGCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 71865 | 0.67 | 0.704025 |
Target: 5'- cGCcGGCCagaCUCCG-CUCGACGUCGu -3' miRNA: 3'- cCGuCUGGg--GAGGCgGGGCUGCAGCu -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 10235 | 0.67 | 0.704025 |
Target: 5'- aGguGACCCCgCCGUCUCGugucCGUuCGAg -3' miRNA: 3'- cCguCUGGGGaGGCGGGGCu---GCA-GCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 19584 | 0.67 | 0.704025 |
Target: 5'- -cCAGuGCCuCCUCCGgCCCGGCGagCGGc -3' miRNA: 3'- ccGUC-UGG-GGAGGCgGGGCUGCa-GCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 137071 | 0.67 | 0.694666 |
Target: 5'- cGGCGGGCUCUUCgCGCgCC-AUGUCGc -3' miRNA: 3'- -CCGUCUGGGGAG-GCGgGGcUGCAGCu -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 183007 | 0.67 | 0.694666 |
Target: 5'- cGCGGgcGCCCCgcgcgcgcccgCCGCCCCgGACGaaGAa -3' miRNA: 3'- cCGUC--UGGGGa----------GGCGGGG-CUGCagCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 111993 | 0.67 | 0.698415 |
Target: 5'- cGGCAcGCCCugcgcggucaccaguCggcgCCGCCCgaaGGCGUCGAg -3' miRNA: 3'- -CCGUcUGGG---------------Ga---GGCGGGg--CUGCAGCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 47981 | 0.67 | 0.694666 |
Target: 5'- cGCGcGCUCCUCCGaCCCGACGagCGu -3' miRNA: 3'- cCGUcUGGGGAGGCgGGGCUGCa-GCu -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 67339 | 0.67 | 0.694666 |
Target: 5'- aGGguG-CCCCggcgCCGCCCC-ACGcCGc -3' miRNA: 3'- -CCguCuGGGGa---GGCGGGGcUGCaGCu -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 13369 | 0.67 | 0.691849 |
Target: 5'- gGGCccuccucccccucgAG-CCCCUCCGCCCCcuCG-CGGa -3' miRNA: 3'- -CCG--------------UCuGGGGAGGCGGGGcuGCaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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