miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11125 3' -62.1 NC_002794.1 + 4505 0.76 0.221796
Target:  5'- uGCAGACauCCgUCCGCCCCuaGACGUCGu -3'
miRNA:   3'- cCGUCUG--GGgAGGCGGGG--CUGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 50791 0.74 0.322602
Target:  5'- gGGCGG-CgCCUCCuCgCCCGGCGUCGGg -3'
miRNA:   3'- -CCGUCuGgGGAGGcG-GGGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 16318 0.73 0.348627
Target:  5'- cGGCuGGAUCCCcCUGCCCCuggccggcaccgacGACGUCGGc -3'
miRNA:   3'- -CCG-UCUGGGGaGGCGGGG--------------CUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 28661 0.73 0.350801
Target:  5'- cGCGGGCCCCggaaCCGCCgCCGGuggcCGUCGc -3'
miRNA:   3'- cCGUCUGGGGa---GGCGG-GGCU----GCAGCu -5'
11125 3' -62.1 NC_002794.1 + 47283 0.73 0.373073
Target:  5'- cGCGGucuuUCCCU-CGCCCCGAgGUCGGu -3'
miRNA:   3'- cCGUCu---GGGGAgGCGGGGCUgCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 64381 0.72 0.388445
Target:  5'- cGCAGccuGCgCCUCCGCCCCGGCcagagggccaccGUCGu -3'
miRNA:   3'- cCGUC---UGgGGAGGCGGGGCUG------------CAGCu -5'
11125 3' -62.1 NC_002794.1 + 107263 0.72 0.396286
Target:  5'- cGGCGGAgccgcgccguCCgCCgccgUCGCCCCGuCGUCGAc -3'
miRNA:   3'- -CCGUCU----------GG-GGa---GGCGGGGCuGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 119531 0.72 0.412269
Target:  5'- cGCGGACCCCU-CGUCCgCGGcCGUCGc -3'
miRNA:   3'- cCGUCUGGGGAgGCGGG-GCU-GCAGCu -5'
11125 3' -62.1 NC_002794.1 + 194480 0.72 0.420409
Target:  5'- aGCGGcuccuccagccGCCCCUCCGCgCCCGGCccgCGGc -3'
miRNA:   3'- cCGUC-----------UGGGGAGGCG-GGGCUGca-GCU- -5'
11125 3' -62.1 NC_002794.1 + 21675 0.71 0.440334
Target:  5'- cGGCGGuauucgcccgcuccgGCUCC-CCGCCUCGGCGUCc- -3'
miRNA:   3'- -CCGUC---------------UGGGGaGGCGGGGCUGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 44692 0.71 0.442863
Target:  5'- -cCAGACCCaccgCCGCCCggccgcgaccgcggCGACGUCGGc -3'
miRNA:   3'- ccGUCUGGGga--GGCGGG--------------GCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 185408 0.71 0.445399
Target:  5'- cGCGGGCCCgaCCGCCgUCGAC-UCGAc -3'
miRNA:   3'- cCGUCUGGGgaGGCGG-GGCUGcAGCU- -5'
11125 3' -62.1 NC_002794.1 + 44027 0.71 0.453912
Target:  5'- cGCAGACCgucgcUCUCCGcCCCCGGgGUCc- -3'
miRNA:   3'- cCGUCUGG-----GGAGGC-GGGGCUgCAGcu -5'
11125 3' -62.1 NC_002794.1 + 77973 0.71 0.453912
Target:  5'- aGCcGACUCCUCCGCCUCGgaACGgCGGg -3'
miRNA:   3'- cCGuCUGGGGAGGCGGGGC--UGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 20731 0.71 0.468584
Target:  5'- uGGCAGACCCUgugcgacgcgcugaUCCGCCagcucucggaaCGGCG-CGAg -3'
miRNA:   3'- -CCGUCUGGGG--------------AGGCGGg----------GCUGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 65273 0.71 0.471198
Target:  5'- cGGCGGcGCCUCcUCGCCCCccucGGCGUCGu -3'
miRNA:   3'- -CCGUC-UGGGGaGGCGGGG----CUGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 65965 0.71 0.471198
Target:  5'- cGGCGGcguCUCCUCCGgCaCCaACGUCGAa -3'
miRNA:   3'- -CCGUCu--GGGGAGGCgG-GGcUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 184482 0.71 0.471198
Target:  5'- cGGCgcgcgGGGCCCCggaCGCCCgGGCGgcgCGGg -3'
miRNA:   3'- -CCG-----UCUGGGGag-GCGGGgCUGCa--GCU- -5'
11125 3' -62.1 NC_002794.1 + 78394 0.71 0.479085
Target:  5'- cGGCgacgacgAGGCCUcgccgcgacuCUCCGCuCCCGGCGUCa- -3'
miRNA:   3'- -CCG-------UCUGGG----------GAGGCG-GGGCUGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 74038 0.71 0.479965
Target:  5'- cGGCccccgaGCCCCga-GCCCCGACGUCu- -3'
miRNA:   3'- -CCGuc----UGGGGaggCGGGGCUGCAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.