Results 21 - 40 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11125 | 3' | -62.1 | NC_002794.1 | + | 74038 | 0.71 | 0.479965 |
Target: 5'- cGGCccccgaGCCCCga-GCCCCGACGUCu- -3' miRNA: 3'- -CCGuc----UGGGGaggCGGGGCUGCAGcu -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 84588 | 0.7 | 0.497734 |
Target: 5'- -cCAGACCCCgaccCCGaCCCCGACccCGAc -3' miRNA: 3'- ccGUCUGGGGa---GGC-GGGGCUGcaGCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 72451 | 0.7 | 0.524918 |
Target: 5'- cGGCGGcGCCCCgcgCCcgGCCCCGcggcgGCGcCGAa -3' miRNA: 3'- -CCGUC-UGGGGa--GG--CGGGGC-----UGCaGCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 192349 | 0.7 | 0.524918 |
Target: 5'- cGCGGACCucggCCUCCGCCgCCGcCGacCGAg -3' miRNA: 3'- cCGUCUGG----GGAGGCGG-GGCuGCa-GCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 119362 | 0.7 | 0.534107 |
Target: 5'- uGCGGACCUCcUCGUUCgCGugGUCGAg -3' miRNA: 3'- cCGUCUGGGGaGGCGGG-GCugCAGCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 106456 | 0.7 | 0.534107 |
Target: 5'- aGGCGGACCUCgUCGCCgUGAC-UCGGc -3' miRNA: 3'- -CCGUCUGGGGaGGCGGgGCUGcAGCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 31393 | 0.69 | 0.543351 |
Target: 5'- cGGCGG-CCCCgccgcgcccgCCGCgCCCGccgccuuCGUCGAc -3' miRNA: 3'- -CCGUCuGGGGa---------GGCG-GGGCu------GCAGCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 50737 | 0.69 | 0.543351 |
Target: 5'- gGGCGGccgccucgacucGCUCgUCCGCCCCgGGCGgcggCGAc -3' miRNA: 3'- -CCGUC------------UGGGgAGGCGGGG-CUGCa---GCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 47702 | 0.69 | 0.561991 |
Target: 5'- aGCAGACCCCgCCGUCCgGcACGguucccaCGAa -3' miRNA: 3'- cCGUCUGGGGaGGCGGGgC-UGCa------GCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 119661 | 0.69 | 0.571377 |
Target: 5'- aGCGuGACCucgaCCUCCGgcguCCCCGGCGUCu- -3' miRNA: 3'- cCGU-CUGG----GGAGGC----GGGGCUGCAGcu -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 81430 | 0.69 | 0.571377 |
Target: 5'- cGGCuucgAGACCgCgcCUGUgCCGACGUCGAg -3' miRNA: 3'- -CCG----UCUGGgGa-GGCGgGGCUGCAGCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 43492 | 0.69 | 0.571377 |
Target: 5'- aGCGGAuCCCCUCCGCCaggCCGgugaaagcGCGcCGGu -3' miRNA: 3'- cCGUCU-GGGGAGGCGG---GGC--------UGCaGCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 118668 | 0.69 | 0.580801 |
Target: 5'- gGGCGcGACgCCCgcggCCGCCgCCGGCGgcagCGc -3' miRNA: 3'- -CCGU-CUG-GGGa---GGCGG-GGCUGCa---GCu -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 138447 | 0.69 | 0.580801 |
Target: 5'- cGGCGG-CgCCUCgGCCUgCGACGUgGAc -3' miRNA: 3'- -CCGUCuGgGGAGgCGGG-GCUGCAgCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 134112 | 0.69 | 0.580801 |
Target: 5'- -aCGGAcCCCCUCCGUCCgaCGGCGcggCGAg -3' miRNA: 3'- ccGUCU-GGGGAGGCGGG--GCUGCa--GCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 76273 | 0.69 | 0.580801 |
Target: 5'- cGGCccgcuGGACCUccagagCUUCGCCCCGAgCGUCu- -3' miRNA: 3'- -CCG-----UCUGGG------GAGGCGGGGCU-GCAGcu -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 50816 | 0.69 | 0.580801 |
Target: 5'- nGGCGcuccGGCgCCC-CCGCCCUcgGGCGUCGc -3' miRNA: 3'- -CCGU----CUG-GGGaGGCGGGG--CUGCAGCu -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 78177 | 0.69 | 0.580801 |
Target: 5'- cGUA-ACCCgUCCGCCCCGcCGUaCGGu -3' miRNA: 3'- cCGUcUGGGgAGGCGGGGCuGCA-GCU- -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 53226 | 0.69 | 0.584579 |
Target: 5'- cGGCGaaacgguccguccucGGCCCg-CCGCgCCGGCGUCGc -3' miRNA: 3'- -CCGU---------------CUGGGgaGGCGgGGCUGCAGCu -5' |
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11125 | 3' | -62.1 | NC_002794.1 | + | 14641 | 0.69 | 0.590256 |
Target: 5'- gGGCacggAGACgCCggCGCCgCGGCGUCGGu -3' miRNA: 3'- -CCG----UCUGgGGagGCGGgGCUGCAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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