miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11125 3' -62.1 NC_002794.1 + 49622 0.69 0.590256
Target:  5'- cGGCGGcGCCUCgcCCGCCCCucuaacCGUCGGc -3'
miRNA:   3'- -CCGUC-UGGGGa-GGCGGGGcu----GCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 40587 0.69 0.590256
Target:  5'- cGCGGGCCCuCUCCuccgagucGUCgCCGGCGUCcGAc -3'
miRNA:   3'- cCGUCUGGG-GAGG--------CGG-GGCUGCAG-CU- -5'
11125 3' -62.1 NC_002794.1 + 51088 0.68 0.59689
Target:  5'- uGGCGcgcucggaaaagacGACCgcgCCUCgCGCUCgGACGUCGAc -3'
miRNA:   3'- -CCGU--------------CUGG---GGAG-GCGGGgCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 193942 0.68 0.599737
Target:  5'- cGGCuccGGCCCCgccgccaccgCCGCCaCCGcCGUCa- -3'
miRNA:   3'- -CCGu--CUGGGGa---------GGCGG-GGCuGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 112296 0.68 0.599737
Target:  5'- gGGCGGcCCCCcgggUCCGaCUUCGGCGcCGAc -3'
miRNA:   3'- -CCGUCuGGGG----AGGC-GGGGCUGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 67539 0.68 0.599737
Target:  5'- cGGCuuGAgCCCUCCGCCCgGGcCG-CGc -3'
miRNA:   3'- -CCGu-CUgGGGAGGCGGGgCU-GCaGCu -5'
11125 3' -62.1 NC_002794.1 + 23638 0.68 0.599737
Target:  5'- cGGCccucGAcCCCCUCCGCCCCc-CGagCGAc -3'
miRNA:   3'- -CCGu---CU-GGGGAGGCGGGGcuGCa-GCU- -5'
11125 3' -62.1 NC_002794.1 + 37002 0.68 0.599737
Target:  5'- aGGCGGACCCgguagagcggCUCgGgCCCGAUGUaGAc -3'
miRNA:   3'- -CCGUCUGGG----------GAGgCgGGGCUGCAgCU- -5'
11125 3' -62.1 NC_002794.1 + 82146 0.68 0.599737
Target:  5'- gGGCGGACaCCCggCCcgacgGCUCCGGCGccCGAg -3'
miRNA:   3'- -CCGUCUG-GGGa-GG-----CGGGGCUGCa-GCU- -5'
11125 3' -62.1 NC_002794.1 + 115811 0.68 0.606387
Target:  5'- cGGCAGaaGCUCUUCCGCcuggaucggcggggCCCGGCGggcUCGGg -3'
miRNA:   3'- -CCGUC--UGGGGAGGCG--------------GGGCUGC---AGCU- -5'
11125 3' -62.1 NC_002794.1 + 66254 0.68 0.609239
Target:  5'- cGGC-GACCCgUCCgGCCCCguaGACGagCGGa -3'
miRNA:   3'- -CCGuCUGGGgAGG-CGGGG---CUGCa-GCU- -5'
11125 3' -62.1 NC_002794.1 + 11793 0.68 0.609239
Target:  5'- cGCGGugUCCguggcgCCGCCgCCGcCGUCGc -3'
miRNA:   3'- cCGUCugGGGa-----GGCGG-GGCuGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 66832 0.68 0.618757
Target:  5'- cGGCGcGACUCCgggcgCCGCCgUCGGCGcggCGAg -3'
miRNA:   3'- -CCGU-CUGGGGa----GGCGG-GGCUGCa--GCU- -5'
11125 3' -62.1 NC_002794.1 + 16521 0.68 0.618757
Target:  5'- cGGCGucGCCaCCgCCGuCCCCGGCGUCc- -3'
miRNA:   3'- -CCGUc-UGG-GGaGGC-GGGGCUGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 146955 0.68 0.622566
Target:  5'- uGGCucucucuucauGGACCgCCUgucgcgaggucggcgCCGCCggCCGACGUCGGc -3'
miRNA:   3'- -CCG-----------UCUGG-GGA---------------GGCGG--GGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 22354 0.68 0.62733
Target:  5'- cGCAG-CCCCUCUcccgcucaccccgGUCCCGAUccgGUCGGg -3'
miRNA:   3'- cCGUCuGGGGAGG-------------CGGGGCUG---CAGCU- -5'
11125 3' -62.1 NC_002794.1 + 62634 0.68 0.628283
Target:  5'- gGGCgucGGACCCCgucgcCCGCCUCGGCaaacUCGu -3'
miRNA:   3'- -CCG---UCUGGGGa----GGCGGGGCUGc---AGCu -5'
11125 3' -62.1 NC_002794.1 + 195562 0.68 0.628283
Target:  5'- aGCc-GCCCCgagCCGCCCCGAC--CGAc -3'
miRNA:   3'- cCGucUGGGGa--GGCGGGGCUGcaGCU- -5'
11125 3' -62.1 NC_002794.1 + 80557 0.68 0.628283
Target:  5'- cGCGGACCCgUUCCGCgCCG-UGcCGAc -3'
miRNA:   3'- cCGUCUGGG-GAGGCGgGGCuGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 103838 0.68 0.632094
Target:  5'- cGCAGGCCUUgaccaccgagcgggCCGCCgCCGACGagagCGAc -3'
miRNA:   3'- cCGUCUGGGGa-------------GGCGG-GGCUGCa---GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.