miRNA display CGI


Results 61 - 80 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11125 3' -62.1 NC_002794.1 + 105427 0.68 0.637811
Target:  5'- aGGguGGCCgCCgCCGCgCCGGCGgCGc -3'
miRNA:   3'- -CCguCUGG-GGaGGCGgGGCUGCaGCu -5'
11125 3' -62.1 NC_002794.1 + 44432 0.68 0.637811
Target:  5'- cGGCucgacGACaCCggcgcgcCCGCCCgGACGUCGGc -3'
miRNA:   3'- -CCGu----CUGgGGa------GGCGGGgCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 191756 0.68 0.637811
Target:  5'- cGGaCAGAgcCCCCUCggaauCGUCCgCGACGcUCGAa -3'
miRNA:   3'- -CC-GUCU--GGGGAG-----GCGGG-GCUGC-AGCU- -5'
11125 3' -62.1 NC_002794.1 + 67028 0.68 0.647336
Target:  5'- cGGCcGGCUCCcgCCGCgucgcggaCCCGGCGUCc- -3'
miRNA:   3'- -CCGuCUGGGGa-GGCG--------GGGCUGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 187586 0.68 0.647336
Target:  5'- cGGCGcGGCCgCCgUCGCgacgCCCGGCGUCGc -3'
miRNA:   3'- -CCGU-CUGG-GGaGGCG----GGGCUGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 53184 0.68 0.647336
Target:  5'- cGGCAGGgCCCagCCGagccaCCCGGacucgucguCGUCGAg -3'
miRNA:   3'- -CCGUCUgGGGa-GGCg----GGGCU---------GCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 126438 0.67 0.65685
Target:  5'- aGGUguGGGCgCCUCgGCCCUGGguccggcuCGUCGGg -3'
miRNA:   3'- -CCG--UCUGgGGAGgCGGGGCU--------GCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 52618 0.67 0.65685
Target:  5'- cGCccGCCCgaCCGCCgCCG-CGUCGAa -3'
miRNA:   3'- cCGucUGGGgaGGCGG-GGCuGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 11862 0.67 0.666347
Target:  5'- cGGCGacGACCgC-CCGCCCCG-CGaCGGg -3'
miRNA:   3'- -CCGU--CUGGgGaGGCGGGGCuGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 46131 0.67 0.666347
Target:  5'- cGGCuc-CCCCgUCCGagUCGGCGUCGAu -3'
miRNA:   3'- -CCGucuGGGG-AGGCggGGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 130644 0.67 0.67582
Target:  5'- cGGCccGCCCg-CCGCCCCGcCGcCGGc -3'
miRNA:   3'- -CCGucUGGGgaGGCGGGGCuGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 181487 0.67 0.67582
Target:  5'- aGGCAGACgagCC-CCGCgagCCCGACGcUCGu -3'
miRNA:   3'- -CCGUCUGg--GGaGGCG---GGGCUGC-AGCu -5'
11125 3' -62.1 NC_002794.1 + 90479 0.67 0.67582
Target:  5'- cGGCGGGgCCg-CCGUCCCGcGCGaUCGGc -3'
miRNA:   3'- -CCGUCUgGGgaGGCGGGGC-UGC-AGCU- -5'
11125 3' -62.1 NC_002794.1 + 191702 0.67 0.682433
Target:  5'- cGCGGACCaCCUCCucgucguccgagcgGCCCacgGACG-CGAc -3'
miRNA:   3'- cCGUCUGG-GGAGG--------------CGGGg--CUGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 37630 0.67 0.684319
Target:  5'- cGCGGACCCCguagCCGCUCUgcagcuuguaguuGGCGUgCGu -3'
miRNA:   3'- cCGUCUGGGGa---GGCGGGG-------------CUGCA-GCu -5'
11125 3' -62.1 NC_002794.1 + 138546 0.67 0.685262
Target:  5'- cGGCGGcuuuuCgCCUCCGCCcgcuCCGuCGUCGc -3'
miRNA:   3'- -CCGUCu----GgGGAGGCGG----GGCuGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 183619 0.67 0.685262
Target:  5'- cGGCcGGCgCCC-CCGCgccCCCGAC-UCGAg -3'
miRNA:   3'- -CCGuCUG-GGGaGGCG---GGGCUGcAGCU- -5'
11125 3' -62.1 NC_002794.1 + 47913 0.67 0.685262
Target:  5'- cGCAcGACCCaggccCCGaCCCCGACGcagaUCGGc -3'
miRNA:   3'- cCGU-CUGGGga---GGC-GGGGCUGC----AGCU- -5'
11125 3' -62.1 NC_002794.1 + 193868 0.67 0.685262
Target:  5'- ----cACCCCUCCccggGCCCCG-CGUCGc -3'
miRNA:   3'- ccgucUGGGGAGG----CGGGGCuGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 17336 0.67 0.685262
Target:  5'- cGGCGu-CCCCUCCGaCCCaCGcCGUgcCGAg -3'
miRNA:   3'- -CCGUcuGGGGAGGC-GGG-GCuGCA--GCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.