miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11125 3' -62.1 NC_002794.1 + 145282 0.66 0.74086
Target:  5'- uGGCAGGCCugaCCU-CGaCCCCGcUGUCGu -3'
miRNA:   3'- -CCGUCUGG---GGAgGC-GGGGCuGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 8215 0.66 0.74086
Target:  5'- uGCGGGCCCCgUCCcCCUCGuccuCGUCc- -3'
miRNA:   3'- cCGUCUGGGG-AGGcGGGGCu---GCAGcu -5'
11125 3' -62.1 NC_002794.1 + 62509 0.66 0.74086
Target:  5'- cGGCGccgccGGCgCCUCCGCCCaccguGACGaaGAg -3'
miRNA:   3'- -CCGU-----CUGgGGAGGCGGGg----CUGCagCU- -5'
11125 3' -62.1 NC_002794.1 + 53880 0.66 0.74086
Target:  5'- cGGCGGACUCCUCgucggGaCUCCGGCGgCGu -3'
miRNA:   3'- -CCGUCUGGGGAGg----C-GGGGCUGCaGCu -5'
11125 3' -62.1 NC_002794.1 + 89717 0.66 0.74086
Target:  5'- cGCGGugCCgaUCCGCg-CGGCGUCGGu -3'
miRNA:   3'- cCGUCugGGg-AGGCGggGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 76107 0.66 0.731755
Target:  5'- cGCGGAUcacuccgacccgCCCUcugaCCGCCCCGcaGCuGUCGAc -3'
miRNA:   3'- cCGUCUG------------GGGA----GGCGGGGC--UG-CAGCU- -5'
11125 3' -62.1 NC_002794.1 + 151933 0.66 0.731755
Target:  5'- cGGCGcaagcGCUCCgCCGCCCgCGACGaCGGc -3'
miRNA:   3'- -CCGUc----UGGGGaGGCGGG-GCUGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 2955 0.66 0.722577
Target:  5'- -uCAGAauCCCCcCCGCCCCGugaGUCa- -3'
miRNA:   3'- ccGUCU--GGGGaGGCGGGGCug-CAGcu -5'
11125 3' -62.1 NC_002794.1 + 128823 0.66 0.722577
Target:  5'- cGGCucGGACUCUgucugaUCCugaGCgCCGGCGUCGAc -3'
miRNA:   3'- -CCG--UCUGGGG------AGG---CGgGGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 26090 0.66 0.722577
Target:  5'- gGGCAG-CgCCgaCgGCCCCGGCGaUCGc -3'
miRNA:   3'- -CCGUCuG-GGgaGgCGGGGCUGC-AGCu -5'
11125 3' -62.1 NC_002794.1 + 133500 0.66 0.722577
Target:  5'- cGGC-GACCCgUCCGacggcgaCCUGGcCGUUGAg -3'
miRNA:   3'- -CCGuCUGGGgAGGCg------GGGCU-GCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 36019 0.66 0.716111
Target:  5'- cGGCGGaauccgccguccgGCCCggCCGCCCgaauaaaagcuuaauUGAUGUCGAa -3'
miRNA:   3'- -CCGUC-------------UGGGgaGGCGGG---------------GCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 123390 0.66 0.713331
Target:  5'- uGCAcACCCUgCUGCUCCG-CGUCGGc -3'
miRNA:   3'- cCGUcUGGGGaGGCGGGGCuGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 186351 0.66 0.713331
Target:  5'- cGGCGacGugCCCgaccagccgCCGCCgCCGcCGUCGu -3'
miRNA:   3'- -CCGU--CugGGGa--------GGCGG-GGCuGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 181157 0.66 0.713331
Target:  5'- -cCAG-CCCgUCCGCCgcgCCGACGgCGAa -3'
miRNA:   3'- ccGUCuGGGgAGGCGG---GGCUGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 17378 0.66 0.713331
Target:  5'- cGCccgAGAgCCCUCCGCCaucuCCGAcCGcCGAa -3'
miRNA:   3'- cCG---UCUgGGGAGGCGG----GGCU-GCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 101660 0.66 0.713331
Target:  5'- cGGCGGuuaGCCCgUCCGaaaCgCCGGCGgagcgCGAg -3'
miRNA:   3'- -CCGUC---UGGGgAGGCg--G-GGCUGCa----GCU- -5'
11125 3' -62.1 NC_002794.1 + 192385 0.67 0.704025
Target:  5'- gGGCuGACCgCCaccgCCGCgCCGGgguaGUCGAa -3'
miRNA:   3'- -CCGuCUGG-GGa---GGCGgGGCUg---CAGCU- -5'
11125 3' -62.1 NC_002794.1 + 71865 0.67 0.704025
Target:  5'- cGCcGGCCagaCUCCG-CUCGACGUCGu -3'
miRNA:   3'- cCGuCUGGg--GAGGCgGGGCUGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 10235 0.67 0.704025
Target:  5'- aGguGACCCCgCCGUCUCGugucCGUuCGAg -3'
miRNA:   3'- cCguCUGGGGaGGCGGGGCu---GCA-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.