miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11125 3' -62.1 NC_002794.1 + 192385 0.67 0.704025
Target:  5'- gGGCuGACCgCCaccgCCGCgCCGGgguaGUCGAa -3'
miRNA:   3'- -CCGuCUGG-GGa---GGCGgGGCUg---CAGCU- -5'
11125 3' -62.1 NC_002794.1 + 146561 0.67 0.704025
Target:  5'- cGGCGGGCCCgaguuccgagUCCGCCgCGGacucgacgaagcUGUCGAg -3'
miRNA:   3'- -CCGUCUGGGg---------AGGCGGgGCU------------GCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 111993 0.67 0.698415
Target:  5'- cGGCAcGCCCugcgcggucaccaguCggcgCCGCCCgaaGGCGUCGAg -3'
miRNA:   3'- -CCGUcUGGG---------------Ga---GGCGGGg--CUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 67339 0.67 0.694666
Target:  5'- aGGguG-CCCCggcgCCGCCCC-ACGcCGc -3'
miRNA:   3'- -CCguCuGGGGa---GGCGGGGcUGCaGCu -5'
11125 3' -62.1 NC_002794.1 + 47981 0.67 0.694666
Target:  5'- cGCGcGCUCCUCCGaCCCGACGagCGu -3'
miRNA:   3'- cCGUcUGGGGAGGCgGGGCUGCa-GCu -5'
11125 3' -62.1 NC_002794.1 + 183007 0.67 0.694666
Target:  5'- cGCGGgcGCCCCgcgcgcgcccgCCGCCCCgGACGaaGAa -3'
miRNA:   3'- cCGUC--UGGGGa----------GGCGGGG-CUGCagCU- -5'
11125 3' -62.1 NC_002794.1 + 137071 0.67 0.694666
Target:  5'- cGGCGGGCUCUUCgCGCgCC-AUGUCGc -3'
miRNA:   3'- -CCGUCUGGGGAG-GCGgGGcUGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 13369 0.67 0.691849
Target:  5'- gGGCccuccucccccucgAG-CCCCUCCGCCCCcuCG-CGGa -3'
miRNA:   3'- -CCG--------------UCuGGGGAGGCGGGGcuGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 108802 0.67 0.690909
Target:  5'- cGGCGGAUCUacgaggugcaaCGCUUCGGCGUCGGc -3'
miRNA:   3'- -CCGUCUGGGgag--------GCGGGGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 138546 0.67 0.685262
Target:  5'- cGGCGGcuuuuCgCCUCCGCCcgcuCCGuCGUCGc -3'
miRNA:   3'- -CCGUCu----GgGGAGGCGG----GGCuGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 183619 0.67 0.685262
Target:  5'- cGGCcGGCgCCC-CCGCgccCCCGAC-UCGAg -3'
miRNA:   3'- -CCGuCUG-GGGaGGCG---GGGCUGcAGCU- -5'
11125 3' -62.1 NC_002794.1 + 47913 0.67 0.685262
Target:  5'- cGCAcGACCCaggccCCGaCCCCGACGcagaUCGGc -3'
miRNA:   3'- cCGU-CUGGGga---GGC-GGGGCUGC----AGCU- -5'
11125 3' -62.1 NC_002794.1 + 193868 0.67 0.685262
Target:  5'- ----cACCCCUCCccggGCCCCG-CGUCGc -3'
miRNA:   3'- ccgucUGGGGAGG----CGGGGCuGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 17336 0.67 0.685262
Target:  5'- cGGCGu-CCCCUCCGaCCCaCGcCGUgcCGAg -3'
miRNA:   3'- -CCGUcuGGGGAGGC-GGG-GCuGCA--GCU- -5'
11125 3' -62.1 NC_002794.1 + 37630 0.67 0.684319
Target:  5'- cGCGGACCCCguagCCGCUCUgcagcuuguaguuGGCGUgCGu -3'
miRNA:   3'- cCGUCUGGGGa---GGCGGGG-------------CUGCA-GCu -5'
11125 3' -62.1 NC_002794.1 + 191702 0.67 0.682433
Target:  5'- cGCGGACCaCCUCCucgucguccgagcgGCCCacgGACG-CGAc -3'
miRNA:   3'- cCGUCUGG-GGAGG--------------CGGGg--CUGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 130644 0.67 0.67582
Target:  5'- cGGCccGCCCg-CCGCCCCGcCGcCGGc -3'
miRNA:   3'- -CCGucUGGGgaGGCGGGGCuGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 90479 0.67 0.67582
Target:  5'- cGGCGGGgCCg-CCGUCCCGcGCGaUCGGc -3'
miRNA:   3'- -CCGUCUgGGgaGGCGGGGC-UGC-AGCU- -5'
11125 3' -62.1 NC_002794.1 + 181487 0.67 0.67582
Target:  5'- aGGCAGACgagCC-CCGCgagCCCGACGcUCGu -3'
miRNA:   3'- -CCGUCUGg--GGaGGCG---GGGCUGC-AGCu -5'
11125 3' -62.1 NC_002794.1 + 11862 0.67 0.666347
Target:  5'- cGGCGacGACCgC-CCGCCCCG-CGaCGGg -3'
miRNA:   3'- -CCGU--CUGGgGaGGCGGGGCuGCaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.