miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11125 3' -62.1 NC_002794.1 + 46131 0.67 0.666347
Target:  5'- cGGCuc-CCCCgUCCGagUCGGCGUCGAu -3'
miRNA:   3'- -CCGucuGGGG-AGGCggGGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 52618 0.67 0.65685
Target:  5'- cGCccGCCCgaCCGCCgCCG-CGUCGAa -3'
miRNA:   3'- cCGucUGGGgaGGCGG-GGCuGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 126438 0.67 0.65685
Target:  5'- aGGUguGGGCgCCUCgGCCCUGGguccggcuCGUCGGg -3'
miRNA:   3'- -CCG--UCUGgGGAGgCGGGGCU--------GCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 53184 0.68 0.647336
Target:  5'- cGGCAGGgCCCagCCGagccaCCCGGacucgucguCGUCGAg -3'
miRNA:   3'- -CCGUCUgGGGa-GGCg----GGGCU---------GCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 67028 0.68 0.647336
Target:  5'- cGGCcGGCUCCcgCCGCgucgcggaCCCGGCGUCc- -3'
miRNA:   3'- -CCGuCUGGGGa-GGCG--------GGGCUGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 187586 0.68 0.647336
Target:  5'- cGGCGcGGCCgCCgUCGCgacgCCCGGCGUCGc -3'
miRNA:   3'- -CCGU-CUGG-GGaGGCG----GGGCUGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 191756 0.68 0.637811
Target:  5'- cGGaCAGAgcCCCCUCggaauCGUCCgCGACGcUCGAa -3'
miRNA:   3'- -CC-GUCU--GGGGAG-----GCGGG-GCUGC-AGCU- -5'
11125 3' -62.1 NC_002794.1 + 44432 0.68 0.637811
Target:  5'- cGGCucgacGACaCCggcgcgcCCGCCCgGACGUCGGc -3'
miRNA:   3'- -CCGu----CUGgGGa------GGCGGGgCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 105427 0.68 0.637811
Target:  5'- aGGguGGCCgCCgCCGCgCCGGCGgCGc -3'
miRNA:   3'- -CCguCUGG-GGaGGCGgGGCUGCaGCu -5'
11125 3' -62.1 NC_002794.1 + 103838 0.68 0.632094
Target:  5'- cGCAGGCCUUgaccaccgagcgggCCGCCgCCGACGagagCGAc -3'
miRNA:   3'- cCGUCUGGGGa-------------GGCGG-GGCUGCa---GCU- -5'
11125 3' -62.1 NC_002794.1 + 80557 0.68 0.628283
Target:  5'- cGCGGACCCgUUCCGCgCCG-UGcCGAc -3'
miRNA:   3'- cCGUCUGGG-GAGGCGgGGCuGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 62634 0.68 0.628283
Target:  5'- gGGCgucGGACCCCgucgcCCGCCUCGGCaaacUCGu -3'
miRNA:   3'- -CCG---UCUGGGGa----GGCGGGGCUGc---AGCu -5'
11125 3' -62.1 NC_002794.1 + 195562 0.68 0.628283
Target:  5'- aGCc-GCCCCgagCCGCCCCGAC--CGAc -3'
miRNA:   3'- cCGucUGGGGa--GGCGGGGCUGcaGCU- -5'
11125 3' -62.1 NC_002794.1 + 22354 0.68 0.62733
Target:  5'- cGCAG-CCCCUCUcccgcucaccccgGUCCCGAUccgGUCGGg -3'
miRNA:   3'- cCGUCuGGGGAGG-------------CGGGGCUG---CAGCU- -5'
11125 3' -62.1 NC_002794.1 + 146955 0.68 0.622566
Target:  5'- uGGCucucucuucauGGACCgCCUgucgcgaggucggcgCCGCCggCCGACGUCGGc -3'
miRNA:   3'- -CCG-----------UCUGG-GGA---------------GGCGG--GGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 16521 0.68 0.618757
Target:  5'- cGGCGucGCCaCCgCCGuCCCCGGCGUCc- -3'
miRNA:   3'- -CCGUc-UGG-GGaGGC-GGGGCUGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 66832 0.68 0.618757
Target:  5'- cGGCGcGACUCCgggcgCCGCCgUCGGCGcggCGAg -3'
miRNA:   3'- -CCGU-CUGGGGa----GGCGG-GGCUGCa--GCU- -5'
11125 3' -62.1 NC_002794.1 + 66254 0.68 0.609239
Target:  5'- cGGC-GACCCgUCCgGCCCCguaGACGagCGGa -3'
miRNA:   3'- -CCGuCUGGGgAGG-CGGGG---CUGCa-GCU- -5'
11125 3' -62.1 NC_002794.1 + 11793 0.68 0.609239
Target:  5'- cGCGGugUCCguggcgCCGCCgCCGcCGUCGc -3'
miRNA:   3'- cCGUCugGGGa-----GGCGG-GGCuGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 115811 0.68 0.606387
Target:  5'- cGGCAGaaGCUCUUCCGCcuggaucggcggggCCCGGCGggcUCGGg -3'
miRNA:   3'- -CCGUC--UGGGGAGGCG--------------GGGCUGC---AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.