miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11125 3' -62.1 NC_002794.1 + 82146 0.68 0.599737
Target:  5'- gGGCGGACaCCCggCCcgacgGCUCCGGCGccCGAg -3'
miRNA:   3'- -CCGUCUG-GGGa-GG-----CGGGGCUGCa-GCU- -5'
11125 3' -62.1 NC_002794.1 + 37002 0.68 0.599737
Target:  5'- aGGCGGACCCgguagagcggCUCgGgCCCGAUGUaGAc -3'
miRNA:   3'- -CCGUCUGGG----------GAGgCgGGGCUGCAgCU- -5'
11125 3' -62.1 NC_002794.1 + 23638 0.68 0.599737
Target:  5'- cGGCccucGAcCCCCUCCGCCCCc-CGagCGAc -3'
miRNA:   3'- -CCGu---CU-GGGGAGGCGGGGcuGCa-GCU- -5'
11125 3' -62.1 NC_002794.1 + 67539 0.68 0.599737
Target:  5'- cGGCuuGAgCCCUCCGCCCgGGcCG-CGc -3'
miRNA:   3'- -CCGu-CUgGGGAGGCGGGgCU-GCaGCu -5'
11125 3' -62.1 NC_002794.1 + 112296 0.68 0.599737
Target:  5'- gGGCGGcCCCCcgggUCCGaCUUCGGCGcCGAc -3'
miRNA:   3'- -CCGUCuGGGG----AGGC-GGGGCUGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 193942 0.68 0.599737
Target:  5'- cGGCuccGGCCCCgccgccaccgCCGCCaCCGcCGUCa- -3'
miRNA:   3'- -CCGu--CUGGGGa---------GGCGG-GGCuGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 51088 0.68 0.59689
Target:  5'- uGGCGcgcucggaaaagacGACCgcgCCUCgCGCUCgGACGUCGAc -3'
miRNA:   3'- -CCGU--------------CUGG---GGAG-GCGGGgCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 14641 0.69 0.590256
Target:  5'- gGGCacggAGACgCCggCGCCgCGGCGUCGGu -3'
miRNA:   3'- -CCG----UCUGgGGagGCGGgGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 40587 0.69 0.590256
Target:  5'- cGCGGGCCCuCUCCuccgagucGUCgCCGGCGUCcGAc -3'
miRNA:   3'- cCGUCUGGG-GAGG--------CGG-GGCUGCAG-CU- -5'
11125 3' -62.1 NC_002794.1 + 49622 0.69 0.590256
Target:  5'- cGGCGGcGCCUCgcCCGCCCCucuaacCGUCGGc -3'
miRNA:   3'- -CCGUC-UGGGGa-GGCGGGGcu----GCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 53226 0.69 0.584579
Target:  5'- cGGCGaaacgguccguccucGGCCCg-CCGCgCCGGCGUCGc -3'
miRNA:   3'- -CCGU---------------CUGGGgaGGCGgGGCUGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 134112 0.69 0.580801
Target:  5'- -aCGGAcCCCCUCCGUCCgaCGGCGcggCGAg -3'
miRNA:   3'- ccGUCU-GGGGAGGCGGG--GCUGCa--GCU- -5'
11125 3' -62.1 NC_002794.1 + 76273 0.69 0.580801
Target:  5'- cGGCccgcuGGACCUccagagCUUCGCCCCGAgCGUCu- -3'
miRNA:   3'- -CCG-----UCUGGG------GAGGCGGGGCU-GCAGcu -5'
11125 3' -62.1 NC_002794.1 + 118668 0.69 0.580801
Target:  5'- gGGCGcGACgCCCgcggCCGCCgCCGGCGgcagCGc -3'
miRNA:   3'- -CCGU-CUG-GGGa---GGCGG-GGCUGCa---GCu -5'
11125 3' -62.1 NC_002794.1 + 78177 0.69 0.580801
Target:  5'- cGUA-ACCCgUCCGCCCCGcCGUaCGGu -3'
miRNA:   3'- cCGUcUGGGgAGGCGGGGCuGCA-GCU- -5'
11125 3' -62.1 NC_002794.1 + 138447 0.69 0.580801
Target:  5'- cGGCGG-CgCCUCgGCCUgCGACGUgGAc -3'
miRNA:   3'- -CCGUCuGgGGAGgCGGG-GCUGCAgCU- -5'
11125 3' -62.1 NC_002794.1 + 50816 0.69 0.580801
Target:  5'- nGGCGcuccGGCgCCC-CCGCCCUcgGGCGUCGc -3'
miRNA:   3'- -CCGU----CUG-GGGaGGCGGGG--CUGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 43492 0.69 0.571377
Target:  5'- aGCGGAuCCCCUCCGCCaggCCGgugaaagcGCGcCGGu -3'
miRNA:   3'- cCGUCU-GGGGAGGCGG---GGC--------UGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 81430 0.69 0.571377
Target:  5'- cGGCuucgAGACCgCgcCUGUgCCGACGUCGAg -3'
miRNA:   3'- -CCG----UCUGGgGa-GGCGgGGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 119661 0.69 0.571377
Target:  5'- aGCGuGACCucgaCCUCCGgcguCCCCGGCGUCu- -3'
miRNA:   3'- cCGU-CUGG----GGAGGC----GGGGCUGCAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.