miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11125 3' -62.1 NC_002794.1 + 2955 0.66 0.722577
Target:  5'- -uCAGAauCCCCcCCGCCCCGugaGUCa- -3'
miRNA:   3'- ccGUCU--GGGGaGGCGGGGCug-CAGcu -5'
11125 3' -62.1 NC_002794.1 + 4505 0.76 0.221796
Target:  5'- uGCAGACauCCgUCCGCCCCuaGACGUCGu -3'
miRNA:   3'- cCGUCUG--GGgAGGCGGGG--CUGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 8215 0.66 0.74086
Target:  5'- uGCGGGCCCCgUCCcCCUCGuccuCGUCc- -3'
miRNA:   3'- cCGUCUGGGG-AGGcGGGGCu---GCAGcu -5'
11125 3' -62.1 NC_002794.1 + 10235 0.67 0.704025
Target:  5'- aGguGACCCCgCCGUCUCGugucCGUuCGAg -3'
miRNA:   3'- cCguCUGGGGaGGCGGGGCu---GCA-GCU- -5'
11125 3' -62.1 NC_002794.1 + 11793 0.68 0.609239
Target:  5'- cGCGGugUCCguggcgCCGCCgCCGcCGUCGc -3'
miRNA:   3'- cCGUCugGGGa-----GGCGG-GGCuGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 11862 0.67 0.666347
Target:  5'- cGGCGacGACCgC-CCGCCCCG-CGaCGGg -3'
miRNA:   3'- -CCGU--CUGGgGaGGCGGGGCuGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 13369 0.67 0.691849
Target:  5'- gGGCccuccucccccucgAG-CCCCUCCGCCCCcuCG-CGGa -3'
miRNA:   3'- -CCG--------------UCuGGGGAGGCGGGGcuGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 14641 0.69 0.590256
Target:  5'- gGGCacggAGACgCCggCGCCgCGGCGUCGGu -3'
miRNA:   3'- -CCG----UCUGgGGagGCGGgGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 16318 0.73 0.348627
Target:  5'- cGGCuGGAUCCCcCUGCCCCuggccggcaccgacGACGUCGGc -3'
miRNA:   3'- -CCG-UCUGGGGaGGCGGGG--------------CUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 16521 0.68 0.618757
Target:  5'- cGGCGucGCCaCCgCCGuCCCCGGCGUCc- -3'
miRNA:   3'- -CCGUc-UGG-GGaGGC-GGGGCUGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 17336 0.67 0.685262
Target:  5'- cGGCGu-CCCCUCCGaCCCaCGcCGUgcCGAg -3'
miRNA:   3'- -CCGUcuGGGGAGGC-GGG-GCuGCA--GCU- -5'
11125 3' -62.1 NC_002794.1 + 17378 0.66 0.713331
Target:  5'- cGCccgAGAgCCCUCCGCCaucuCCGAcCGcCGAa -3'
miRNA:   3'- cCG---UCUgGGGAGGCGG----GGCU-GCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 19584 0.67 0.704025
Target:  5'- -cCAGuGCCuCCUCCGgCCCGGCGagCGGc -3'
miRNA:   3'- ccGUC-UGG-GGAGGCgGGGCUGCa-GCU- -5'
11125 3' -62.1 NC_002794.1 + 20731 0.71 0.468584
Target:  5'- uGGCAGACCCUgugcgacgcgcugaUCCGCCagcucucggaaCGGCG-CGAg -3'
miRNA:   3'- -CCGUCUGGGG--------------AGGCGGg----------GCUGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 21675 0.71 0.440334
Target:  5'- cGGCGGuauucgcccgcuccgGCUCC-CCGCCUCGGCGUCc- -3'
miRNA:   3'- -CCGUC---------------UGGGGaGGCGGGGCUGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 22354 0.68 0.62733
Target:  5'- cGCAG-CCCCUCUcccgcucaccccgGUCCCGAUccgGUCGGg -3'
miRNA:   3'- cCGUCuGGGGAGG-------------CGGGGCUG---CAGCU- -5'
11125 3' -62.1 NC_002794.1 + 23638 0.68 0.599737
Target:  5'- cGGCccucGAcCCCCUCCGCCCCc-CGagCGAc -3'
miRNA:   3'- -CCGu---CU-GGGGAGGCGGGGcuGCa-GCU- -5'
11125 3' -62.1 NC_002794.1 + 26090 0.66 0.722577
Target:  5'- gGGCAG-CgCCgaCgGCCCCGGCGaUCGc -3'
miRNA:   3'- -CCGUCuG-GGgaGgCGGGGCUGC-AGCu -5'
11125 3' -62.1 NC_002794.1 + 28661 0.73 0.350801
Target:  5'- cGCGGGCCCCggaaCCGCCgCCGGuggcCGUCGc -3'
miRNA:   3'- cCGUCUGGGGa---GGCGG-GGCU----GCAGCu -5'
11125 3' -62.1 NC_002794.1 + 31393 0.69 0.543351
Target:  5'- cGGCGG-CCCCgccgcgcccgCCGCgCCCGccgccuuCGUCGAc -3'
miRNA:   3'- -CCGUCuGGGGa---------GGCG-GGGCu------GCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.