miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11125 3' -62.1 NC_002794.1 + 35457 0.66 0.749881
Target:  5'- cGGCuGAUCgCCagCUGCCUcuaccuguucuuCGACGUCGAg -3'
miRNA:   3'- -CCGuCUGG-GGa-GGCGGG------------GCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 36019 0.66 0.716111
Target:  5'- cGGCGGaauccgccguccgGCCCggCCGCCCgaauaaaagcuuaauUGAUGUCGAa -3'
miRNA:   3'- -CCGUC-------------UGGGgaGGCGGG---------------GCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 37002 0.68 0.599737
Target:  5'- aGGCGGACCCgguagagcggCUCgGgCCCGAUGUaGAc -3'
miRNA:   3'- -CCGUCUGGG----------GAGgCgGGGCUGCAgCU- -5'
11125 3' -62.1 NC_002794.1 + 37630 0.67 0.684319
Target:  5'- cGCGGACCCCguagCCGCUCUgcagcuuguaguuGGCGUgCGu -3'
miRNA:   3'- cCGUCUGGGGa---GGCGGGG-------------CUGCA-GCu -5'
11125 3' -62.1 NC_002794.1 + 40587 0.69 0.590256
Target:  5'- cGCGGGCCCuCUCCuccgagucGUCgCCGGCGUCcGAc -3'
miRNA:   3'- cCGUCUGGG-GAGG--------CGG-GGCUGCAG-CU- -5'
11125 3' -62.1 NC_002794.1 + 43492 0.69 0.571377
Target:  5'- aGCGGAuCCCCUCCGCCaggCCGgugaaagcGCGcCGGu -3'
miRNA:   3'- cCGUCU-GGGGAGGCGG---GGC--------UGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 44027 0.71 0.453912
Target:  5'- cGCAGACCgucgcUCUCCGcCCCCGGgGUCc- -3'
miRNA:   3'- cCGUCUGG-----GGAGGC-GGGGCUgCAGcu -5'
11125 3' -62.1 NC_002794.1 + 44432 0.68 0.637811
Target:  5'- cGGCucgacGACaCCggcgcgcCCGCCCgGACGUCGGc -3'
miRNA:   3'- -CCGu----CUGgGGa------GGCGGGgCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 44692 0.71 0.442863
Target:  5'- -cCAGACCCaccgCCGCCCggccgcgaccgcggCGACGUCGGc -3'
miRNA:   3'- ccGUCUGGGga--GGCGGG--------------GCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 46131 0.67 0.666347
Target:  5'- cGGCuc-CCCCgUCCGagUCGGCGUCGAu -3'
miRNA:   3'- -CCGucuGGGG-AGGCggGGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 47283 0.73 0.373073
Target:  5'- cGCGGucuuUCCCU-CGCCCCGAgGUCGGu -3'
miRNA:   3'- cCGUCu---GGGGAgGCGGGGCUgCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 47702 0.69 0.561991
Target:  5'- aGCAGACCCCgCCGUCCgGcACGguucccaCGAa -3'
miRNA:   3'- cCGUCUGGGGaGGCGGGgC-UGCa------GCU- -5'
11125 3' -62.1 NC_002794.1 + 47913 0.67 0.685262
Target:  5'- cGCAcGACCCaggccCCGaCCCCGACGcagaUCGGc -3'
miRNA:   3'- cCGU-CUGGGga---GGC-GGGGCUGC----AGCU- -5'
11125 3' -62.1 NC_002794.1 + 47981 0.67 0.694666
Target:  5'- cGCGcGCUCCUCCGaCCCGACGagCGu -3'
miRNA:   3'- cCGUcUGGGGAGGCgGGGCUGCa-GCu -5'
11125 3' -62.1 NC_002794.1 + 49622 0.69 0.590256
Target:  5'- cGGCGGcGCCUCgcCCGCCCCucuaacCGUCGGc -3'
miRNA:   3'- -CCGUC-UGGGGa-GGCGGGGcu----GCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 49861 0.66 0.758813
Target:  5'- cGGCGGcGCCCg-CCaCCCgGACGUgGAg -3'
miRNA:   3'- -CCGUC-UGGGgaGGcGGGgCUGCAgCU- -5'
11125 3' -62.1 NC_002794.1 + 50737 0.69 0.543351
Target:  5'- gGGCGGccgccucgacucGCUCgUCCGCCCCgGGCGgcggCGAc -3'
miRNA:   3'- -CCGUC------------UGGGgAGGCGGGG-CUGCa---GCU- -5'
11125 3' -62.1 NC_002794.1 + 50791 0.74 0.322602
Target:  5'- gGGCGG-CgCCUCCuCgCCCGGCGUCGGg -3'
miRNA:   3'- -CCGUCuGgGGAGGcG-GGGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 50816 0.69 0.580801
Target:  5'- nGGCGcuccGGCgCCC-CCGCCCUcgGGCGUCGc -3'
miRNA:   3'- -CCGU----CUG-GGGaGGCGGGG--CUGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 51088 0.68 0.59689
Target:  5'- uGGCGcgcucggaaaagacGACCgcgCCUCgCGCUCgGACGUCGAc -3'
miRNA:   3'- -CCGU--------------CUGG---GGAG-GCGGGgCUGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.