miRNA display CGI


Results 41 - 60 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11125 3' -62.1 NC_002794.1 + 52618 0.67 0.65685
Target:  5'- cGCccGCCCgaCCGCCgCCG-CGUCGAa -3'
miRNA:   3'- cCGucUGGGgaGGCGG-GGCuGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 53096 0.66 0.749881
Target:  5'- gGGCcaacaGGACCCCggCgGUUCCGgagcucGCGUCGAc -3'
miRNA:   3'- -CCG-----UCUGGGGa-GgCGGGGC------UGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 53184 0.68 0.647336
Target:  5'- cGGCAGGgCCCagCCGagccaCCCGGacucgucguCGUCGAg -3'
miRNA:   3'- -CCGUCUgGGGa-GGCg----GGGCU---------GCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 53226 0.69 0.584579
Target:  5'- cGGCGaaacgguccguccucGGCCCg-CCGCgCCGGCGUCGc -3'
miRNA:   3'- -CCGU---------------CUGGGgaGGCGgGGCUGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 53880 0.66 0.74086
Target:  5'- cGGCGGACUCCUCgucggGaCUCCGGCGgCGu -3'
miRNA:   3'- -CCGUCUGGGGAGg----C-GGGGCUGCaGCu -5'
11125 3' -62.1 NC_002794.1 + 60761 0.66 0.74086
Target:  5'- ---cGACCUCUgagcgCCGCCgCCGcCGUCGAa -3'
miRNA:   3'- ccguCUGGGGA-----GGCGG-GGCuGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 62509 0.66 0.74086
Target:  5'- cGGCGccgccGGCgCCUCCGCCCaccguGACGaaGAg -3'
miRNA:   3'- -CCGU-----CUGgGGAGGCGGGg----CUGCagCU- -5'
11125 3' -62.1 NC_002794.1 + 62634 0.68 0.628283
Target:  5'- gGGCgucGGACCCCgucgcCCGCCUCGGCaaacUCGu -3'
miRNA:   3'- -CCG---UCUGGGGa----GGCGGGGCUGc---AGCu -5'
11125 3' -62.1 NC_002794.1 + 63477 0.66 0.758813
Target:  5'- aGGCGGcgGCCgCCgucgacgaCGCCgCGGCGUCGu -3'
miRNA:   3'- -CCGUC--UGG-GGag------GCGGgGCUGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 64381 0.72 0.388445
Target:  5'- cGCAGccuGCgCCUCCGCCCCGGCcagagggccaccGUCGu -3'
miRNA:   3'- cCGUC---UGgGGAGGCGGGGCUG------------CAGCu -5'
11125 3' -62.1 NC_002794.1 + 65273 0.71 0.471198
Target:  5'- cGGCGGcGCCUCcUCGCCCCccucGGCGUCGu -3'
miRNA:   3'- -CCGUC-UGGGGaGGCGGGG----CUGCAGCu -5'
11125 3' -62.1 NC_002794.1 + 65743 0.66 0.749881
Target:  5'- cGGCcuccgacGGCCCCgcgCCGCcgccgCCCGugGUgGGg -3'
miRNA:   3'- -CCGu------CUGGGGa--GGCG-----GGGCugCAgCU- -5'
11125 3' -62.1 NC_002794.1 + 65965 0.71 0.471198
Target:  5'- cGGCGGcguCUCCUCCGgCaCCaACGUCGAa -3'
miRNA:   3'- -CCGUCu--GGGGAGGCgG-GGcUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 66254 0.68 0.609239
Target:  5'- cGGC-GACCCgUCCgGCCCCguaGACGagCGGa -3'
miRNA:   3'- -CCGuCUGGGgAGG-CGGGG---CUGCa-GCU- -5'
11125 3' -62.1 NC_002794.1 + 66832 0.68 0.618757
Target:  5'- cGGCGcGACUCCgggcgCCGCCgUCGGCGcggCGAg -3'
miRNA:   3'- -CCGU-CUGGGGa----GGCGG-GGCUGCa--GCU- -5'
11125 3' -62.1 NC_002794.1 + 67028 0.68 0.647336
Target:  5'- cGGCcGGCUCCcgCCGCgucgcggaCCCGGCGUCc- -3'
miRNA:   3'- -CCGuCUGGGGa-GGCG--------GGGCUGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 67339 0.67 0.694666
Target:  5'- aGGguG-CCCCggcgCCGCCCC-ACGcCGc -3'
miRNA:   3'- -CCguCuGGGGa---GGCGGGGcUGCaGCu -5'
11125 3' -62.1 NC_002794.1 + 67539 0.68 0.599737
Target:  5'- cGGCuuGAgCCCUCCGCCCgGGcCG-CGc -3'
miRNA:   3'- -CCGu-CUgGGGAGGCGGGgCU-GCaGCu -5'
11125 3' -62.1 NC_002794.1 + 68957 0.66 0.767648
Target:  5'- cGGCGccucuccCUCCUCCGCgggccgcgaCgCCGGCGUCGAc -3'
miRNA:   3'- -CCGUcu-----GGGGAGGCG---------G-GGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 71865 0.67 0.704025
Target:  5'- cGCcGGCCagaCUCCG-CUCGACGUCGu -3'
miRNA:   3'- cCGuCUGGg--GAGGCgGGGCUGCAGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.