miRNA display CGI


Results 61 - 80 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11125 3' -62.1 NC_002794.1 + 72451 0.7 0.524918
Target:  5'- cGGCGGcGCCCCgcgCCcgGCCCCGcggcgGCGcCGAa -3'
miRNA:   3'- -CCGUC-UGGGGa--GG--CGGGGC-----UGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 74038 0.71 0.479965
Target:  5'- cGGCccccgaGCCCCga-GCCCCGACGUCu- -3'
miRNA:   3'- -CCGuc----UGGGGaggCGGGGCUGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 76107 0.66 0.731755
Target:  5'- cGCGGAUcacuccgacccgCCCUcugaCCGCCCCGcaGCuGUCGAc -3'
miRNA:   3'- cCGUCUG------------GGGA----GGCGGGGC--UG-CAGCU- -5'
11125 3' -62.1 NC_002794.1 + 76273 0.69 0.580801
Target:  5'- cGGCccgcuGGACCUccagagCUUCGCCCCGAgCGUCu- -3'
miRNA:   3'- -CCG-----UCUGGG------GAGGCGGGGCU-GCAGcu -5'
11125 3' -62.1 NC_002794.1 + 77973 0.71 0.453912
Target:  5'- aGCcGACUCCUCCGCCUCGgaACGgCGGg -3'
miRNA:   3'- cCGuCUGGGGAGGCGGGGC--UGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 78177 0.69 0.580801
Target:  5'- cGUA-ACCCgUCCGCCCCGcCGUaCGGu -3'
miRNA:   3'- cCGUcUGGGgAGGCGGGGCuGCA-GCU- -5'
11125 3' -62.1 NC_002794.1 + 78394 0.71 0.479085
Target:  5'- cGGCgacgacgAGGCCUcgccgcgacuCUCCGCuCCCGGCGUCa- -3'
miRNA:   3'- -CCG-------UCUGGG----------GAGGCG-GGGCUGCAGcu -5'
11125 3' -62.1 NC_002794.1 + 80557 0.68 0.628283
Target:  5'- cGCGGACCCgUUCCGCgCCG-UGcCGAc -3'
miRNA:   3'- cCGUCUGGG-GAGGCGgGGCuGCaGCU- -5'
11125 3' -62.1 NC_002794.1 + 81430 0.69 0.571377
Target:  5'- cGGCuucgAGACCgCgcCUGUgCCGACGUCGAg -3'
miRNA:   3'- -CCG----UCUGGgGa-GGCGgGGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 82091 0.66 0.749881
Target:  5'- gGGCAccccGACCUCgucugCCGCCCCcgcagccuccucGGCGUgGGc -3'
miRNA:   3'- -CCGU----CUGGGGa----GGCGGGG------------CUGCAgCU- -5'
11125 3' -62.1 NC_002794.1 + 82146 0.68 0.599737
Target:  5'- gGGCGGACaCCCggCCcgacgGCUCCGGCGccCGAg -3'
miRNA:   3'- -CCGUCUG-GGGa-GG-----CGGGGCUGCa-GCU- -5'
11125 3' -62.1 NC_002794.1 + 84588 0.7 0.497734
Target:  5'- -cCAGACCCCgaccCCGaCCCCGACccCGAc -3'
miRNA:   3'- ccGUCUGGGGa---GGC-GGGGCUGcaGCU- -5'
11125 3' -62.1 NC_002794.1 + 89717 0.66 0.74086
Target:  5'- cGCGGugCCgaUCCGCg-CGGCGUCGGu -3'
miRNA:   3'- cCGUCugGGg-AGGCGggGCUGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 90479 0.67 0.67582
Target:  5'- cGGCGGGgCCg-CCGUCCCGcGCGaUCGGc -3'
miRNA:   3'- -CCGUCUgGGgaGGCGGGGC-UGC-AGCU- -5'
11125 3' -62.1 NC_002794.1 + 101660 0.66 0.713331
Target:  5'- cGGCGGuuaGCCCgUCCGaaaCgCCGGCGgagcgCGAg -3'
miRNA:   3'- -CCGUC---UGGGgAGGCg--G-GGCUGCa----GCU- -5'
11125 3' -62.1 NC_002794.1 + 103838 0.68 0.632094
Target:  5'- cGCAGGCCUUgaccaccgagcgggCCGCCgCCGACGagagCGAc -3'
miRNA:   3'- cCGUCUGGGGa-------------GGCGG-GGCUGCa---GCU- -5'
11125 3' -62.1 NC_002794.1 + 105427 0.68 0.637811
Target:  5'- aGGguGGCCgCCgCCGCgCCGGCGgCGc -3'
miRNA:   3'- -CCguCUGG-GGaGGCGgGGCUGCaGCu -5'
11125 3' -62.1 NC_002794.1 + 106456 0.7 0.534107
Target:  5'- aGGCGGACCUCgUCGCCgUGAC-UCGGc -3'
miRNA:   3'- -CCGUCUGGGGaGGCGGgGCUGcAGCU- -5'
11125 3' -62.1 NC_002794.1 + 107263 0.72 0.396286
Target:  5'- cGGCGGAgccgcgccguCCgCCgccgUCGCCCCGuCGUCGAc -3'
miRNA:   3'- -CCGUCU----------GG-GGa---GGCGGGGCuGCAGCU- -5'
11125 3' -62.1 NC_002794.1 + 108802 0.67 0.690909
Target:  5'- cGGCGGAUCUacgaggugcaaCGCUUCGGCGUCGGc -3'
miRNA:   3'- -CCGUCUGGGgag--------GCGGGGCUGCAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.